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BaseInfo

ncRNA ID gma-miR166o
Species Glycine max
Class miRNA
Genome position chr6:12992817-12992961 [-]
Reference genome v1.0
Source miRBase
Length 21
Mature sequence(if miRNA) 7 - UCGGACCAGGCUUCAUUCCCC - 27
Stem-loop(if miRNA) AU    A A      UU      CU     -    GAUAUG       AUAUGAAAGUGUUUCAGUUAAAUUCC
  GUUG G GGAAUG  GUCUGG  CGAGG UCAU      GAGAUAU                          A
  |||| | ||||||  ||||||  ||||| ||||      |||||||                          G
  CGAC C CCUUAC  CGGACC  GCUCU AGUA      UCCCAUA                          G
-C    C C      UU      AG     U    ----AA       UUUAAUUAAAGGUAAUUAAAUAUAUG
Stem-loop sequence AUGUUGAGAGGAAUGUUGUCUGGCUCGAGGUCAUGAUAUGGAGAUAUAUAUGAAAGUGUUUCAGUUAAAUUCCAGGGUAUAUAAAUUAAUGGAAAUUAAUUUAUACCCUAAAUGAUUCUCGGACCAGGCUUCAUUCCCCCCAGCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014779133.1
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  **||||||||||||||||||=
targets:338   CUGGAAUGAAGCCUGGUCCGG   358

1.0 PREDICTED: Glycine max homeobox-leucine zipper protein ATHB-15-like (LOC100800697), transcript variant X4, mRNA homeobox-leucine zipper protein ATHB-15-like(LOC100800697) coding protein psRNATarget
XM_014779132.1
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  **||||||||||||||||||=
targets:498   CUGGAAUGAAGCCUGGUCCGG   518

1.0 PREDICTED: Glycine max homeobox-leucine zipper protein ATHB-15-like (LOC100800697), transcript variant X3, mRNA homeobox-leucine zipper protein ATHB-15-like(LOC100800697) coding protein psRNATarget
XM_014777646.1
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  **||||||||||||||||||=
targets:627   CUGGAAUGAAGCCUGGUCCGG   647

1.0 PREDICTED: Glycine max homeobox-leucine zipper protein ATHB-15-like (LOC100775524), transcript variant X2, mRNA homeobox-leucine zipper protein ATHB-15-like(LOC100775524) coding protein psRNATarget
XM_014777647.1
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  **||||||||||||||||||=
targets:628   CUGGAAUGAAGCCUGGUCCGG   648

1.0 PREDICTED: Glycine max homeobox-leucine zipper protein ATHB-15-like (LOC100775524), transcript variant X3, mRNA homeobox-leucine zipper protein ATHB-15-like(LOC100775524) coding protein psRNATarget
XM_003530064.2
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  **||||||||||||||||||=
targets:650   CUGGAAUGAAGCCUGGUCCGG   670

1.0 PREDICTED: Glycine max homeobox-leucine zipper protein ATHB-15-like (LOC100775524), transcript variant X1, mRNA homeobox-leucine zipper protein ATHB-15-like(LOC100775524) coding protein psRNATarget
XM_003531605.3
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  **||||||||||||||||||=
targets:788   CUGGAAUGAAGCCUGGUCCGG   808

1.0 PREDICTED: Glycine max homeobox-leucine zipper protein ATHB-15-like (LOC100800697), transcript variant X2, mRNA homeobox-leucine zipper protein ATHB-15-like(LOC100800697) coding protein psRNATarget
XM_006585513.2
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  **||||||||||||||||||=
targets:791   CUGGAAUGAAGCCUGGUCCGG   811

1.0 PREDICTED: Glycine max homeobox-leucine zipper protein ATHB-15-like (LOC100800697), transcript variant X1, mRNA homeobox-leucine zipper protein ATHB-15-like(LOC100800697) coding protein psRNATarget
XM_003530061.3
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  **||||||||||||||||||=
targets:904   CUGGAAUGAAGCCUGGUCCGG   924

1.0 PREDICTED: Glycine max homeobox-leucine zipper protein ATHB-15-like (LOC100819365), mRNA homeobox-leucine zipper protein ATHB-15-like(LOC100819365) coding protein psRNATarget
XM_003531604.3
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  **||||||||||||||||||=
targets:977   CUGGAAUGAAGCCUGGUCCGG   997

1.0 PREDICTED: Glycine max homeobox-leucine zipper protein ATHB-15 (LOC100800165), mRNA homeobox-leucine zipper protein ATHB-15(LOC100800165) coding protein psRNATarget
XM_003526448.3
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  **||=|||||||||||||||=
targets:575   CUGGGAUGAAGCCUGGUCCGG   595

2.0 PREDICTED: Glycine max homeobox-leucine zipper protein ATHB-15-like (LOC100797291), mRNA homeobox-leucine zipper protein ATHB-15-like(LOC100797291) coding protein psRNATarget
XM_003524945.3
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  **||=|||||||||||||||=
targets:590   UUGGGAUGAAGCCUGGUCCGG   610

2.0 PREDICTED: Glycine max homeobox-leucine zipper protein ATHB-14-like (LOC100806322), mRNA homeobox-leucine zipper protein ATHB-14-like(LOC100806322) coding protein psRNATarget
XM_003522668.3
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  **||=|||||||||||||||=
targets:919   CUGGGAUGAAGCCUGGUCCGG   939

2.0 PREDICTED: Glycine max homeobox-leucine zipper protein ATHB-8-like (LOC100815727), mRNA homeobox-leucine zipper protein ATHB-8-like(LOC100815727) coding protein psRNATarget
XM_003546207.3
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  **||=|||||||||||||||=
targets:929   UUGGGAUGAAGCCUGGUCCGG   949

2.0 PREDICTED: Glycine max homeobox-leucine zipper protein ATHB-14-like (LOC100807428), mRNA homeobox-leucine zipper protein ATHB-14-like(LOC100807428) coding protein psRNATarget
XM_003532740.3
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  **||=|||||||||||||||=
targets:1065   UUGGGAUGAAGCCUGGUCCGG   1085

2.0 PREDICTED: Glycine max homeobox-leucine zipper protein ATHB-14-like (LOC100807637), mRNA homeobox-leucine zipper protein ATHB-14-like(LOC100807637) coding protein psRNATarget
XM_003535030.3
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  **||=|||||||||||||||=
targets:1180   UUGGGAUGAAGCCUGGUCCGG   1200

2.0 PREDICTED: Glycine max homeobox-leucine zipper protein ATHB-14-like (LOC100779499), transcript variant X2, mRNA homeobox-leucine zipper protein ATHB-14-like(LOC100779499) coding protein psRNATarget
XM_014761858.1
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  **||=|||||||||||||||=
targets:1186   UUGGGAUGAAGCCUGGUCCGG   1206

2.0 PREDICTED: Glycine max homeobox-leucine zipper protein ATHB-14-like (LOC100779499), transcript variant X1, mRNA homeobox-leucine zipper protein ATHB-14-like(LOC100779499) coding protein psRNATarget
XM_003538102.3
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  **||=|||||||||||||||=
targets:1265   CUGGGAUGAAGCCUGGUCCGG   1285

2.0 PREDICTED: Glycine max homeobox-leucine zipper protein REVOLUTA-like (LOC100804870), mRNA homeobox-leucine zipper protein REVOLUTA-like(LOC100804870) coding protein psRNATarget
XM_006592195.2
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  **||=|||||||||||||||=
targets:1291   CUGGGAUGAAGCCUGGUCCGG   1311

2.0 PREDICTED: Glycine max homeobox-leucine zipper protein REVOLUTA-like (LOC100813804), mRNA homeobox-leucine zipper protein REVOLUTA-like(LOC100813804) coding protein psRNATarget

Reference

1 PMID:22559273
"Genome organization and characteristics of soybean microRNAs";
Turner M, Yu O, Subramanian S;
BMC Genomics. 13:169(2012).
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