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BaseInfo

ncRNA ID gma-miR319a
Species Glycine max
Class miRNA
Genome position chr5:40832084-40832290 [+]
Reference genome v1.0
Source miRBase
Length 20
Mature sequence(if miRNA) 169 - UUGGACUGAAGGGAGCUCCC - 188
Stem-loop(if miRNA) CGUUGA    CCU    -U   A     UU          CUC     U   AG            A -  G   AC       UC  AA           AGCG
      AGAC   AAGG  AAG GAGCU  CUUCAGUCCA   AUGGG GAC  UAAGAUUCAAUU G CU CCG  UCAUUCA  CA  UGUUGAGUGUA    A
      ||||   ||||  ||| |||||  ||||||||||   ||||| |||  |||||||||||| | || |||  |||||||  ||  |||||||||||
      UCUG   UUCC  UUC CUCGA  GAAGUCAGGU   UGUCC UUG  AUUCUAAGUUAA C GA GGC  AGUAAGU  GU  ACGACUCAUAU    A
-CAUUC    -UU    UU   C     GG          UCA     U   -A            A A  G   GU       GA  AG           AAAU
Stem-loop sequence CGUUGAAGACCCUAAGGUAAGAGAGCUUUCUUCAGUCCACUCAUGGGUGACAGUAAGAUUCAAUUAGCUGCCGACUCAUUCAUCCAAAUGUUGAGUGUAAGCGAAUAAAUAUACUCAGCAGAUGAGUGAAUGAUGCGGGAGACAAAUUGAAUCUUAAGUUUCCUGUACUUGGACUGAAGGGAGCUCCCUUUUCCUUUUGUCUCUUAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
HI410474.1
ncRNA:20   CCCUCGAGGGAAGUCAGGUU   1
  *|||||||||||||||||||
targets:13   AGGAGCUCCCUUCAGUCCAA   32

0.0 Sequence 8599 from Patent EP2074227 NA coding protein psRNATarget
LQ242604.1
ncRNA:20   CCCUCGAGGGAAGUCAGGUU   1
  *|||||||||||||||||||
targets:13   AGGAGCUCCCUUCAGUCCAA   32

0.0 Sequence 8599 from Patent EP2985353 NA coding protein psRNATarget
JB170935.1
ncRNA:20   CCCUCGAGGGAAGUCAGGUU   1
  *|||||||||||||||||||
targets:13   AGGAGCUCCCUUCAGUCCAA   32

0.0 Sequence 8599 from Patent EP2559767 NA coding protein psRNATarget
BT098668.1
ncRNA:20   CCCUCGAGGGAAGUCAGGUU   1
  *|||||||||||||||||||
targets:280   AGGAGCUCCCUUCAGUCCAA   299

0.0 Soybean clone JCVI-FLGm-12F22 unknown mRNA NA coding protein psRNATarget
XM_003543777.3
ncRNA:20   CCCUCGAGGGAAGUCAGGUU   1
  *|||||||||||||*|||||
targets:1082   UGGAGCUCCCUUCACUCCAA   1101

1.5 PREDICTED: Glycine max transcription factor GAMYB-like (LOC100800658), transcript variant X1, mRNA transcription factor GAMYB-like(LOC100800658) coding protein psRNATarget
XM_006593564.2
ncRNA:20   CCCUCGAGGGAAGUCAGGUU   1
  *|||||||||||||*|||||
targets:1097   UGGAGCUCCCUUCACUCCAA   1116

1.5 PREDICTED: Glycine max transcription factor GAMYB-like (LOC100800658), transcript variant X4, mRNA transcription factor GAMYB-like(LOC100800658) coding protein psRNATarget
XM_014765331.1
ncRNA:20   CCCUCGAGGGAAGUCAGGUU   1
  *|||||||||||||*|||||
targets:1137   UGGAGCUCCCUUCACUCCAA   1156

1.5 PREDICTED: Glycine max transcription factor GAMYB-like (LOC100800658), transcript variant X3, mRNA transcription factor GAMYB-like(LOC100800658) coding protein psRNATarget
XM_006593563.2
ncRNA:20   CCCUCGAGGGAAGUCAGGUU   1
  *|||||||||||||*|||||
targets:1405   UGGAGCUCCCUUCACUCCAA   1424

1.5 PREDICTED: Glycine max transcription factor GAMYB-like (LOC100800658), transcript variant X2, mRNA transcription factor GAMYB-like(LOC100800658) coding protein psRNATarget
XM_006605565.2
ncRNA:20   CCCUCGAGGGAAGUCAGGUU   1
  *|||||||||||||*|||||
targets:1514   UGGAGCUCCCUUCACUCCAA   1533

1.5 PREDICTED: Glycine max transcription factor GAMYB-like (LOC100818609), transcript variant X2, mRNA transcription factor GAMYB-like(LOC100818609) coding protein psRNATarget
XM_014767378.1
ncRNA:20   CCCUCGAGGGAAGUCAGGUU   1
  *|||||||||||||*|||||
targets:1304   UGGAGCUCCCUUCACUCCAA   1323

1.5 PREDICTED: Glycine max transcription factor GAMYB-like (LOC100785877), transcript variant X2, mRNA transcription factor GAMYB-like(LOC100785877) coding protein psRNATarget
XM_014773037.1
ncRNA:20   CCCUCGAGGGAAGUCAGGUU   1
  *|||||||||||||*|||||
targets:1612   UGGAGCUCCCUUCACUCCAA   1631

1.5 PREDICTED: Glycine max transcription factor GAMYB-like (LOC100818609), transcript variant X1, mRNA transcription factor GAMYB-like(LOC100818609) coding protein psRNATarget
XM_006597995.2
ncRNA:20   CCCUCGAGGGAAGUCAGGUU   1
  *|||||||||||||*|||||
targets:1310   UGGAGCUCCCUUCACUCCAA   1329

1.5 PREDICTED: Glycine max transcription factor GAMYB-like (LOC100785877), transcript variant X1, mRNA transcription factor GAMYB-like(LOC100785877) coding protein psRNATarget
EU328398.1
ncRNA:20   CCCUCGAGGGAAGUCAGGUU   1
  *|||||||||||||*|||||
targets:1365   UGGAGCUCCCUUCACUCCAA   1384

1.5 Glycine max GAMYB protein (GAMYB) mRNA, complete cds NA coding protein psRNATarget
XM_006594289.2
ncRNA:20   CCCUCGAGGGAAGUCAGGUU   1
  *|||||||||||||*|||||
targets:1363   UGGAGCUCCCUUCACUCCAA   1382

1.5 PREDICTED: Glycine max transcription factor GAMYB-like (LOC100810415), transcript variant X4, mRNA transcription factor GAMYB-like(LOC100810415) coding protein psRNATarget
XM_006594286.2
ncRNA:20   CCCUCGAGGGAAGUCAGGUU   1
  *|||||||||||||*|||||
targets:1369   UGGAGCUCCCUUCACUCCAA   1388

1.5 PREDICTED: Glycine max transcription factor GAMYB-like (LOC100810415), transcript variant X1, mRNA transcription factor GAMYB-like(LOC100810415) coding protein psRNATarget
KC525897.1
ncRNA:20   CCCUCGAGGGAAGUCAGGUU   1
  *|||||||||||||*|||||
targets:1401   UGGAGCUCCCUUCACUCCAA   1420

1.5 Glycine max GAMBY1-like family protein (GAMYB1) mRNA, complete cds NA coding protein psRNATarget
NM_001317612.1
ncRNA:20   CCCUCGAGGGAAGUCAGGUU   1
  *|||||||||||||*|||||
targets:1401   UGGAGCUCCCUUCACUCCAA   1420

1.5 Glycine max transcription factor GAMYB-like (LOC100810415), mRNA transcription factor GAMYB-like(LOC100810415) coding protein psRNATarget
XM_006594287.2
ncRNA:20   CCCUCGAGGGAAGUCAGGUU   1
  *|||||||||||||*|||||
targets:1423   UGGAGCUCCCUUCACUCCAA   1442

1.5 PREDICTED: Glycine max transcription factor GAMYB-like (LOC100810415), transcript variant X2, mRNA transcription factor GAMYB-like(LOC100810415) coding protein psRNATarget
XM_006594288.2
ncRNA:20   CCCUCGAGGGAAGUCAGGUU   1
  *|||||||||||||*|||||
targets:1822   UGGAGCUCCCUUCACUCCAA   1841

1.5 PREDICTED: Glycine max transcription factor GAMYB-like (LOC100810415), transcript variant X3, mRNA transcription factor GAMYB-like(LOC100810415) coding protein psRNATarget
XM_006597998.2
ncRNA:20   CCCUCGAGGGAAGUCAGGUU   1
  *|||||||||||||*|||||
targets:1951   UGGAGCUCCCUUCACUCCAA   1970

1.5 PREDICTED: Glycine max transcription factor GAMYB-like (LOC100785877), transcript variant X3, mRNA transcription factor GAMYB-like(LOC100785877) coding protein psRNATarget
XM_003526306.3
ncRNA:20   CCCUCGAGGGAAGUCAGGUU   1
  **||||||||||||*|||||
targets:1261   CAGAGCUCCCUUCACUCCAA   1280

2.5 PREDICTED: Glycine max transcription factor GAMYB-like (LOC100805804), transcript variant X2, mRNA transcription factor GAMYB-like(LOC100805804) coding protein psRNATarget
XM_006582324.2
ncRNA:20   CCCUCGAGGGAAGUCAGGUU   1
  **||||||||||||*|||||
targets:1261   CAGAGCUCCCUUCACUCCAA   1280

2.5 PREDICTED: Glycine max transcription factor GAMYB-like (LOC100805804), transcript variant X1, mRNA transcription factor GAMYB-like(LOC100805804) coding protein psRNATarget
XM_003523865.3
ncRNA:20   CCCUCGAGGGAAGUCAGGUU   1
  **||||||||||||*|||||
targets:1324   CAGAGCUCCCUUCACUCCAA   1343

2.5 PREDICTED: Glycine max transcription factor GAMYB-like (LOC100792349), transcript variant X2, mRNA transcription factor GAMYB-like(LOC100792349) coding protein psRNATarget
XM_006578333.2
ncRNA:20   CCCUCGAGGGAAGUCAGGUU   1
  **||||||||||||*|||||
targets:1324   CAGAGCUCCCUUCACUCCAA   1343

2.5 PREDICTED: Glycine max transcription factor GAMYB-like (LOC100792349), transcript variant X1, mRNA transcription factor GAMYB-like(LOC100792349) coding protein psRNATarget

Reference

1 PMID:18402695
"Novel and nodulation-regulated microRNAs in soybean roots";
Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O;
BMC Genomics. 9:160(2008).
2 PMID:21504877
"MicroRNAs in the shoot apical meristem of soybean";
Wong CE, Zhao YT, Wang XJ, Croft L, Wang ZH, Haerizadeh F, Mattick JS, Singh MB, Carroll BJ, Bhalla PL;
J Exp Bot. 62:2495-2506(2011).
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