Search result

BaseInfo

ncRNA ID gma-miR399d
Species Glycine max
Class miRNA
Genome position chr5:34958623-34958725 [-]
Reference genome v1.0
Source miRBase
Length 21
Mature sequence(if miRNA) 11 - UGCCAAAGGAGAUUUGCCCAG - 31
Stem-loop(if miRNA) U   U C   A A         CU           ACCAACAAGCUA    -    U
 GGG G AUU C GGGCAAGUU  CUUUGGCAGGU            UGCA AUAC A
 ||| | ||| | |||||||||  |||||||||||            |||| |||| U
 UCC C UAA G CCCGUUUAG  GAAACCGUCUA            ACGU UGUG A
-   U U   C A         AG           ------------    G    U
Stem-loop sequence UGGGUGCAUUACAGGGCAAGUUCUCUUUGGCAGGUACCAACAAGCUAUGCAAUACUAUAUGUGUGUGCAAUCUGCCAAAGGAGAUUUGCCCAGCAAUUCUCCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006597376.2
ncRNA:21   GACCCGUUUAGAGGAAACCGU   1
  |||||||||||||||||||||
targets:1034   CUGGGCAAAUCUCCUUUGGCA   1054

0.0 PREDICTED: Glycine max probable ubiquitin-conjugating enzyme E2 24 (LOC100784814), transcript variant X3, mRNA probable ubiquitin-conjugating enzyme E2 24(LOC100784814) coding protein psRNATarget
XM_006597376.2
ncRNA:21   GACCCGUUUAGAGGAAACCGU   1
  *||||||||||||||||||||
targets:605   GUGGGCAAAUCUCCUUUGGCA   625

0.0 PREDICTED: Glycine max probable ubiquitin-conjugating enzyme E2 24 (LOC100784814), transcript variant X3, mRNA probable ubiquitin-conjugating enzyme E2 24(LOC100784814) coding protein psRNATarget
XM_006597375.2
ncRNA:21   GACCCGUUUAGAGGAAACCGU   1
  |||||||||||||||||||||
targets:1033   CUGGGCAAAUCUCCUUUGGCA   1053

0.0 PREDICTED: Glycine max probable ubiquitin-conjugating enzyme E2 24 (LOC100784814), transcript variant X2, mRNA probable ubiquitin-conjugating enzyme E2 24(LOC100784814) coding protein psRNATarget
XM_006597375.2
ncRNA:21   GACCCGUUUAGAGGAAACCGU   1
  *||||||||||||||||||||
targets:604   GUGGGCAAAUCUCCUUUGGCA   624

0.0 PREDICTED: Glycine max probable ubiquitin-conjugating enzyme E2 24 (LOC100784814), transcript variant X2, mRNA probable ubiquitin-conjugating enzyme E2 24(LOC100784814) coding protein psRNATarget
XM_003542998.3
ncRNA:21   GACCCGUUUAGAGGAAACCGU   1
  |||||||||||||||||||||
targets:1009   CUGGGCAAAUCUCCUUUGGCA   1029

0.0 PREDICTED: Glycine max probable ubiquitin-conjugating enzyme E2 24 (LOC100805463), transcript variant X3, mRNA probable ubiquitin-conjugating enzyme E2 24(LOC100805463) coding protein psRNATarget
XM_003542998.3
ncRNA:21   GACCCGUUUAGAGGAAACCGU   1
  *||||||||||||||||||||
targets:599   GUGGGCAAAUCUCCUUUGGCA   619

0.0 PREDICTED: Glycine max probable ubiquitin-conjugating enzyme E2 24 (LOC100805463), transcript variant X3, mRNA probable ubiquitin-conjugating enzyme E2 24(LOC100805463) coding protein psRNATarget
XM_014765804.1
ncRNA:21   GACCCGUUUAGAGGAAACCGU   1
  |||||||||||||||||||||
targets:1012   CUGGGCAAAUCUCCUUUGGCA   1032

0.0 PREDICTED: Glycine max probable ubiquitin-conjugating enzyme E2 24 (LOC100805463), transcript variant X1, mRNA probable ubiquitin-conjugating enzyme E2 24(LOC100805463) coding protein psRNATarget
XM_014765804.1
ncRNA:21   GACCCGUUUAGAGGAAACCGU   1
  *||||||||||||||||||||
targets:602   GUGGGCAAAUCUCCUUUGGCA   622

0.0 PREDICTED: Glycine max probable ubiquitin-conjugating enzyme E2 24 (LOC100805463), transcript variant X1, mRNA probable ubiquitin-conjugating enzyme E2 24(LOC100805463) coding protein psRNATarget
XM_003545918.3
ncRNA:21   GACCCGUUUAGAGGAAACCGU   1
  |||||||||||||||||||||
targets:1033   CUGGGCAAAUCUCCUUUGGCA   1053

0.0 PREDICTED: Glycine max probable ubiquitin-conjugating enzyme E2 24 (LOC100784814), transcript variant X1, mRNA probable ubiquitin-conjugating enzyme E2 24(LOC100784814) coding protein psRNATarget
XM_003545918.3
ncRNA:21   GACCCGUUUAGAGGAAACCGU   1
  *||||||||||||||||||||
targets:604   GUGGGCAAAUCUCCUUUGGCA   624

0.0 PREDICTED: Glycine max probable ubiquitin-conjugating enzyme E2 24 (LOC100784814), transcript variant X1, mRNA probable ubiquitin-conjugating enzyme E2 24(LOC100784814) coding protein psRNATarget
XM_014765805.1
ncRNA:21   GACCCGUUUAGAGGAAACCGU   1
  |||||||||||||||||||||
targets:1012   CUGGGCAAAUCUCCUUUGGCA   1032

0.0 PREDICTED: Glycine max probable ubiquitin-conjugating enzyme E2 24 (LOC100805463), transcript variant X2, mRNA probable ubiquitin-conjugating enzyme E2 24(LOC100805463) coding protein psRNATarget
XM_014765805.1
ncRNA:21   GACCCGUUUAGAGGAAACCGU   1
  *||||||||||||||||||||
targets:602   GUGGGCAAAUCUCCUUUGGCA   622

0.0 PREDICTED: Glycine max probable ubiquitin-conjugating enzyme E2 24 (LOC100805463), transcript variant X2, mRNA probable ubiquitin-conjugating enzyme E2 24(LOC100805463) coding protein psRNATarget
BT090266.1
ncRNA:21   GACCCGUUUAGAGGAAACCGU   1
  **|||||||||||||||||||
targets:512   GGGGGCAAAUCUCCUUUGGCA   532

0.0 Soybean clone JCVI-FLGm-4E15 unknown mRNA NA coding protein psRNATarget
XM_003542700.3
ncRNA:21   GACCCGUUUAGAGGAAACCGU   1
  **|||||||||||||||||||
targets:1049   GGGGGCAAAUCUCCUUUGGCA   1069

0.0 PREDICTED: Glycine max probable ubiquitin-conjugating enzyme E2 24 (LOC100306246), transcript variant X1, mRNA probable ubiquitin-conjugating enzyme E2 24(LOC100306246) coding protein psRNATarget
XM_006594256.2
ncRNA:21   GACCCGUUUAGAGGAAACCGU   1
  **|||||||||||||||||||
targets:1084   GGGGGCAAAUCUCCUUUGGCA   1104

0.0 PREDICTED: Glycine max probable ubiquitin-conjugating enzyme E2 24 (LOC100306246), transcript variant X2, mRNA probable ubiquitin-conjugating enzyme E2 24(LOC100306246) coding protein psRNATarget
XM_003528406.3
ncRNA:21   GACCCGUUUAGAGGAAACCGU   1
  |||||*|||||||||||||||
targets:999   CUGGGAAAAUCUCCUUUGGCA   1019

1.0 PREDICTED: Glycine max probable ubiquitin-conjugating enzyme E2 24 (LOC100809740), transcript variant X1, mRNA probable ubiquitin-conjugating enzyme E2 24(LOC100809740) coding protein psRNATarget
XM_003528406.3
ncRNA:21   GACCCGUUUAGAGGAAACCGU   1
  =||||||*|||||||||||||
targets:908   UUGGGCAUAUCUCCUUUGGCA   928

1.0 PREDICTED: Glycine max probable ubiquitin-conjugating enzyme E2 24 (LOC100809740), transcript variant X1, mRNA probable ubiquitin-conjugating enzyme E2 24(LOC100809740) coding protein psRNATarget
XM_014778124.1
ncRNA:21   GACCCGUUUAGAGGAAACCGU   1
  |||||*|||||||||||||||
targets:999   CUGGGAAAAUCUCCUUUGGCA   1019

1.0 PREDICTED: Glycine max probable ubiquitin-conjugating enzyme E2 24 (LOC100809740), transcript variant X2, mRNA probable ubiquitin-conjugating enzyme E2 24(LOC100809740) coding protein psRNATarget
XM_014778124.1
ncRNA:21   GACCCGUUUAGAGGAAACCGU   1
  =||||||*|||||||||||||
targets:908   UUGGGCAUAUCUCCUUUGGCA   928

1.0 PREDICTED: Glycine max probable ubiquitin-conjugating enzyme E2 24 (LOC100809740), transcript variant X2, mRNA probable ubiquitin-conjugating enzyme E2 24(LOC100809740) coding protein psRNATarget
XM_003542700.3
ncRNA:21   GACCCGUUUAGAGGAAACCGU   1
  =||||||*|||||||||||||
targets:1233   UUGGGCAUAUCUCCUUUGGCA   1253

1.0 PREDICTED: Glycine max probable ubiquitin-conjugating enzyme E2 24 (LOC100306246), transcript variant X1, mRNA probable ubiquitin-conjugating enzyme E2 24(LOC100306246) coding protein psRNATarget
XM_006594256.2
ncRNA:21   GACCCGUUUAGAGGAAACCGU   1
  =||||||*|||||||||||||
targets:1268   UUGGGCAUAUCUCCUUUGGCA   1288

1.0 PREDICTED: Glycine max probable ubiquitin-conjugating enzyme E2 24 (LOC100306246), transcript variant X2, mRNA probable ubiquitin-conjugating enzyme E2 24(LOC100306246) coding protein psRNATarget
XM_006597376.2
ncRNA:21   GACCCGUUUAGAGGAAACCGU   1
  =|||||||*||||||||||||
targets:720   UUGGGCAACUCUCCUUUGGCA   740

1.5 PREDICTED: Glycine max probable ubiquitin-conjugating enzyme E2 24 (LOC100784814), transcript variant X3, mRNA probable ubiquitin-conjugating enzyme E2 24(LOC100784814) coding protein psRNATarget
XM_006597376.2
ncRNA:21   GACCCGUUUAGAGGAAACCGU   1
  =|||||||||||*||||||||
targets:858   UUGGGCAAAUCUACUUUGGCA   878

1.5 PREDICTED: Glycine max probable ubiquitin-conjugating enzyme E2 24 (LOC100784814), transcript variant X3, mRNA probable ubiquitin-conjugating enzyme E2 24(LOC100784814) coding protein psRNATarget
XM_006597375.2
ncRNA:21   GACCCGUUUAGAGGAAACCGU   1
  =|||||||*||||||||||||
targets:719   UUGGGCAACUCUCCUUUGGCA   739

1.5 PREDICTED: Glycine max probable ubiquitin-conjugating enzyme E2 24 (LOC100784814), transcript variant X2, mRNA probable ubiquitin-conjugating enzyme E2 24(LOC100784814) coding protein psRNATarget
XM_006597375.2
ncRNA:21   GACCCGUUUAGAGGAAACCGU   1
  =|||||||||||*||||||||
targets:857   UUGGGCAAAUCUACUUUGGCA   877

1.5 PREDICTED: Glycine max probable ubiquitin-conjugating enzyme E2 24 (LOC100784814), transcript variant X2, mRNA probable ubiquitin-conjugating enzyme E2 24(LOC100784814) coding protein psRNATarget
XM_003542998.3
ncRNA:21   GACCCGUUUAGAGGAAACCGU   1
  =|||||||*||||||||||||
targets:710   UUGGGCAACUCUCCUUUGGCA   730

1.5 PREDICTED: Glycine max probable ubiquitin-conjugating enzyme E2 24 (LOC100805463), transcript variant X3, mRNA probable ubiquitin-conjugating enzyme E2 24(LOC100805463) coding protein psRNATarget
XM_003542998.3
ncRNA:21   GACCCGUUUAGAGGAAACCGU   1
  |*||||||||||*||||||||
targets:861   CAGGGCAAAUCUACUUUGGCA   881

1.5 PREDICTED: Glycine max probable ubiquitin-conjugating enzyme E2 24 (LOC100805463), transcript variant X3, mRNA probable ubiquitin-conjugating enzyme E2 24(LOC100805463) coding protein psRNATarget
XM_014765804.1
ncRNA:21   GACCCGUUUAGAGGAAACCGU   1
  =|||||||*||||||||||||
targets:713   UUGGGCAACUCUCCUUUGGCA   733

1.5 PREDICTED: Glycine max probable ubiquitin-conjugating enzyme E2 24 (LOC100805463), transcript variant X1, mRNA probable ubiquitin-conjugating enzyme E2 24(LOC100805463) coding protein psRNATarget
XM_014765804.1
ncRNA:21   GACCCGUUUAGAGGAAACCGU   1
  |*||||||||||*||||||||
targets:864   CAGGGCAAAUCUACUUUGGCA   884

1.5 PREDICTED: Glycine max probable ubiquitin-conjugating enzyme E2 24 (LOC100805463), transcript variant X1, mRNA probable ubiquitin-conjugating enzyme E2 24(LOC100805463) coding protein psRNATarget
XM_003545918.3
ncRNA:21   GACCCGUUUAGAGGAAACCGU   1
  =|||||||*||||||||||||
targets:719   UUGGGCAACUCUCCUUUGGCA   739

1.5 PREDICTED: Glycine max probable ubiquitin-conjugating enzyme E2 24 (LOC100784814), transcript variant X1, mRNA probable ubiquitin-conjugating enzyme E2 24(LOC100784814) coding protein psRNATarget
XM_003545918.3
ncRNA:21   GACCCGUUUAGAGGAAACCGU   1
  =|||||||||||*||||||||
targets:857   UUGGGCAAAUCUACUUUGGCA   877

1.5 PREDICTED: Glycine max probable ubiquitin-conjugating enzyme E2 24 (LOC100784814), transcript variant X1, mRNA probable ubiquitin-conjugating enzyme E2 24(LOC100784814) coding protein psRNATarget
XM_014765805.1
ncRNA:21   GACCCGUUUAGAGGAAACCGU   1
  =|||||||*||||||||||||
targets:713   UUGGGCAACUCUCCUUUGGCA   733

1.5 PREDICTED: Glycine max probable ubiquitin-conjugating enzyme E2 24 (LOC100805463), transcript variant X2, mRNA probable ubiquitin-conjugating enzyme E2 24(LOC100805463) coding protein psRNATarget
XM_014765805.1
ncRNA:21   GACCCGUUUAGAGGAAACCGU   1
  |*||||||||||*||||||||
targets:864   CAGGGCAAAUCUACUUUGGCA   884

1.5 PREDICTED: Glycine max probable ubiquitin-conjugating enzyme E2 24 (LOC100805463), transcript variant X2, mRNA probable ubiquitin-conjugating enzyme E2 24(LOC100805463) coding protein psRNATarget
BT090266.1
ncRNA:21   GACCCGUUUAGAGGAAACCGU   1
  ||||||||||||=||||||||
targets:362   CUGGGCAAAUCUUCUUUGGCA   382

1.5 Soybean clone JCVI-FLGm-4E15 unknown mRNA NA coding protein psRNATarget
XM_003528406.3
ncRNA:21   GACCCGUUUAGAGGAAACCGU   1
  ||||||||||||=||||||||
targets:561   CUGGGCAAAUCUUCUUUGGCA   581

1.5 PREDICTED: Glycine max probable ubiquitin-conjugating enzyme E2 24 (LOC100809740), transcript variant X1, mRNA probable ubiquitin-conjugating enzyme E2 24(LOC100809740) coding protein psRNATarget
XM_014778124.1
ncRNA:21   GACCCGUUUAGAGGAAACCGU   1
  ||||||||||||=||||||||
targets:561   CUGGGCAAAUCUUCUUUGGCA   581

1.5 PREDICTED: Glycine max probable ubiquitin-conjugating enzyme E2 24 (LOC100809740), transcript variant X2, mRNA probable ubiquitin-conjugating enzyme E2 24(LOC100809740) coding protein psRNATarget
XM_003542700.3
ncRNA:21   GACCCGUUUAGAGGAAACCGU   1
  ||||||||||||=||||||||
targets:899   CUGGGCAAAUCUUCUUUGGCA   919

1.5 PREDICTED: Glycine max probable ubiquitin-conjugating enzyme E2 24 (LOC100306246), transcript variant X1, mRNA probable ubiquitin-conjugating enzyme E2 24(LOC100306246) coding protein psRNATarget
XM_006594256.2
ncRNA:21   GACCCGUUUAGAGGAAACCGU   1
  ||||||||||||=||||||||
targets:934   CUGGGCAAAUCUUCUUUGGCA   954

1.5 PREDICTED: Glycine max probable ubiquitin-conjugating enzyme E2 24 (LOC100306246), transcript variant X2, mRNA probable ubiquitin-conjugating enzyme E2 24(LOC100306246) coding protein psRNATarget
XM_003542700.3
ncRNA:21   GACCCGUUUAGAGGAAACCGU   1
  |||||*||||||=||||||||
targets:1323   CUGGGAAAAUCUUCUUUGGCA   1343

2.5 PREDICTED: Glycine max probable ubiquitin-conjugating enzyme E2 24 (LOC100306246), transcript variant X1, mRNA probable ubiquitin-conjugating enzyme E2 24(LOC100306246) coding protein psRNATarget
XM_006594256.2
ncRNA:21   GACCCGUUUAGAGGAAACCGU   1
  |||||*||||||=||||||||
targets:1358   CUGGGAAAAUCUUCUUUGGCA   1378

2.5 PREDICTED: Glycine max probable ubiquitin-conjugating enzyme E2 24 (LOC100306246), transcript variant X2, mRNA probable ubiquitin-conjugating enzyme E2 24(LOC100306246) coding protein psRNATarget
XM_003528406.3
ncRNA:21   GA---CCCGUUUAGAGGAAACCGU   1
  ||---|||||||||||||||||||
targets:707   CUUGGGGGCAAAUCUCCUUUGGCA   730

3.0 PREDICTED: Glycine max probable ubiquitin-conjugating enzyme E2 24 (LOC100809740), transcript variant X1, mRNA probable ubiquitin-conjugating enzyme E2 24(LOC100809740) coding protein psRNATarget
XM_014778124.1
ncRNA:21   GA---CCCGUUUAGAGGAAACCGU   1
  ||---|||||||||||||||||||
targets:707   CUUGGGGGCAAAUCUCCUUUGGCA   730

3.0 PREDICTED: Glycine max probable ubiquitin-conjugating enzyme E2 24 (LOC100809740), transcript variant X2, mRNA probable ubiquitin-conjugating enzyme E2 24(LOC100809740) coding protein psRNATarget

Reference

1 PMID:22156213
"MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs";
Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC;
Genes Dev. 25:2540-2553(2011).
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