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BaseInfo

ncRNA ID gma-miR9764
Species Glycine max
Class miRNA
Genome position chr5:34345168-34345254 [+]
Reference genome v1.0
Source miRBase
Length 21
Mature sequence(if miRNA) 62 - UGGAUACACUCUUACUUUCUC - 82
Stem-loop(if miRNA) UAAAAU        U  U                      UUA
      GAGAAAGU AG GUGUAUCCACUCUUGAUUUGAA   U
      |||||||| || ||||||||||||||||||||||
      CUCUUUCA UC CACAUAGGUGGGAACUAAACUU   C
-UUUCU        U  U                      UAC
Stem-loop sequence UAAAAUGAGAAAGUUAGUGUGUAUCCACUCUUGAUUUGAAUUAUCCAUUUCAAAUCAAGGGUGGAUACACUCUUACUUUCUCUCUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014763043.1
ncRNA:21   CUCUUUCAUUCUCACAUAGGU   1
  |||||||||||||||||||||
targets:1485   GAGAAAGUAAGAGUGUAUCCA   1505

0.0 PREDICTED: Glycine max protein CLEC16A-like (LOC102666080), mRNA protein CLEC16A-like(LOC102666080) coding protein psRNATarget
XM_014777096.1
ncRNA:21   CUCUUUCAUUCUCACAUAGGU   1
  |**||||*|||||||||||||
targets:1497   GUAAAAGAAAGAGUGUAUCCA   1517

2.0 PREDICTED: Glycine max protein ACCELERATED CELL DEATH 6-like (LOC102659999), mRNA protein ACCELERATED CELL DEATH 6-like(LOC102659999) coding protein psRNATarget
XM_014775576.1
ncRNA:21   CUCUUUCAUUCUCACAUAGGU   1
  *||||||||||||||*||||*
targets:513   CAGAAAGUAAGAGUGCAUCCU   533

2.5 PREDICTED: Glycine max uncharacterized LOC100795421 (LOC100795421), transcript variant X1, mRNA uncharacterized LOC100795421(LOC100795421) coding protein psRNATarget

Reference

1 PMID:24475082
"Systems and evolutionary characterization of microRNAs and their underlying regulatory networks in soybean cotyledons";
Goettel W, Liu Z, Xia J, Zhang W, Zhao PX, An YQ;
PLoS One. 9:e86153(2014).