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BaseInfo

ncRNA ID	ath-miR860
Species	Arabidopsis thaliana
Class	miRNA
Genome position	chr5:9098791-9098916 [+]
Reference genome	TAIR10
Source	miRBase
Length	21
Mature sequence(if miRNA)	86 - UCAAUAGAUUGGACUAUGUAU - 106
Stem-loop(if miRNA)	G             C                         G    A UA   --     CU AU UCUUGGUUAAAUU AAUAUAUAUAGUCCAAUCUAUUGAA UACU G  CAC  CAGCU  A || ||||||||||||| ||||||||||||||||||||||||| |||| |  |||  ||||| UA AGAAUCAGUUUAA UUAUAUGUAUCAGGUUAGAUAACUU AUGA U  GUG  GUCGA  A   G             A                         G    A GG   UA     AU
Stem-loop sequence	AUGUCUUGGUUAAAUUCAAUAUAUAUAGUCCAAUCUAUUGAAGUACUAGUACACCAGCUCUAAUAAGCUGAUGUGGGUAAGUAGUUCAAUAGAUUGGACUAUGUAUAUUAAAUUUGACUAAGAGAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BX832323.1	ncRNA:21   UAUGUAUCAGGUUAGAUAACU   1   |||=||||||||||||||||| targets:1518   AUAUAUAGUCCAAUCUAUUGA   1538 Target Full Sequence	1.0	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH65ZH02 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
X73417.1	ncRNA:21   UAUGUAUCAGGUUAGAUAACU   1   |||=||||||||||||||||| targets:1526   AUAUAUAGUCCAAUCUAUUGA   1546 Target Full Sequence	1.0	A.thaliana HEM15 mRNA for ferrochelatase	NA	coding protein	psRNATarget
AK226466.1	ncRNA:21   UAUGUAUCAGGUUAGAUAACU   1   |||=||||||||||||||||| targets:1517   AUAUAUAGUCCAAUCUAUUGA   1537 Target Full Sequence	1.0	Arabidopsis thaliana mRNA for ferrochelatase-I, complete cds, clone: RAFL06-67-J12	NA	coding protein	psRNATarget
AY078959.1	ncRNA:21   UAUGUAUCAGGUUAGAUAACU   1   |||=||||||||||||||||| targets:1632   AUAUAUAGUCCAAUCUAUUGA   1652 Target Full Sequence	1.0	Arabidopsis thaliana AT5g26030/T1N24_17 mRNA, complete sequence	NA	coding protein	psRNATarget
NM_122504.5	ncRNA:21   UAUGUAUCAGGUUAGAUAACU   1   |||=||||||||||||||||| targets:1684   AUAUAUAGUCCAAUCUAUUGA   1704 Target Full Sequence	1.0	Arabidopsis thaliana ferrochelatase 1 (FC1), mRNA	ferrochelatase 1(FC1)	coding protein	psRNATarget

Reference

1	PMID:17299599 "High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes"; Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC; PLoS One. 2:e219(2007).
2	PMID:19815687 "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis"; Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW; J Exp Bot. 61:165-177(2010).