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BaseInfo

ncRNA ID	gma-miR5374-3p
Species	Glycine max
Class	miRNA
Genome position	chr5:9279518-9279737 [+]
Reference genome	v1.0
Source	miRBase
Length	21
Mature sequence(if miRNA)	192 - UUCAAAUGUCAGAUUAUAAAA - 212
Stem-loop(if miRNA)	G GA                C            G CU          -----GUUA    CAACAAC  UCCACAAUGCUAAUGGGAGAAUUCAAAUUUGGGACCUCUCU CAUC A  UUUUAUAGUCUGACAU UGGAAUUUAAAU U  CAACAAGGGC         GAUC       GU                                         C |||| |  |||||||||||||||| |||||||||||| |  ||||||||||         ||||       || GUGG U  AAAAUAUUAGACUGUA ACUUUAGAUUUA A  GUUGUUCUCG         CUAG       CC                                         U     G AC                A            A AG          AAGAUGCCC    -----AG  CACAGGAAAUAAACAAAGUUUCGCACUUUCCUCUUCUUUAC
Stem-loop sequence	CAUCGAGAUUUUAUAGUCUGACAUCUGGAAUUUAAAUGUCUCAACAAGGGCGUUAGAUCCAACAACGUUCCACAAUGCUAAUGGGAGAAUUCAAAUUUGGGACCUCUCUCUCAUUUCUUCUCCUUUCACGCUUUGAAACAAAUAAAGGACACCCGAGAUCCCCGUAGAAGCUCUUGUUGGAAAAUUUAGAUUUCAAAUGUCAGAUUAUAAAACAUGGGUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_006601140.2	ncRNA:21   AAAAUAUUAGACUGUAAACUU   1   **|||||||*||||||||||* targets:527   CCUUAUAAUGUGACAUUUGAC   547 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100799131 (LOC100799131), transcript variant X2, mRNA	uncharacterized LOC100799131(LOC100799131)	coding protein	psRNATarget
XM_003550180.3	ncRNA:21   AAAAUAUUAGACUGUAAACUU   1   **|||||||*||||||||||* targets:527   CCUUAUAAUGUGACAUUUGAC   547 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100799131 (LOC100799131), transcript variant X1, mRNA	uncharacterized LOC100799131(LOC100799131)	coding protein	psRNATarget

Reference

1	PMID:21663675 "Identification of novel soybean microRNAs involved in abiotic and biotic stresses"; Kulcheski FR, de Oliveira LF, Molina LG, Almerao MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimaraes FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R; BMC Genomics. 12:307(2011).
2	PMID:22156213 "MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs"; Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC; Genes Dev. 25:2540-2553(2011).
3	PMID:24475082 "Systems and evolutionary characterization of microRNAs and their underlying regulatory networks in soybean cotyledons"; Goettel W, Liu Z, Xia J, Zhang W, Zhao PX, An YQ; PLoS One. 9:e86153(2014).