| ncRNA ID | ath-miR5641 |
| Species | Arabidopsis thaliana |
| Class | miRNA |
| Genome position | chr5:9022836-9023326 [+] |
| Reference genome | TAIR10 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 433 - UGGAAGAAGAUGAUAGAAUUA - 453 |
| Stem-loop(if miRNA) |
AC A AC UUC UAGCUAAUUGAAAUCCCAAAUUCUUCUAUCUUCCAUAUCUUCUUCUAUCAUUUUCUUUAAGUUUGAUUUCGAAAUCUCUAAUUUUAUCAUCUUCUUCCAUUGUUUGAUUUCGAAAUCCUAAUUCUUCCAUCUUCAUCCAUCUUUCUAGCUCCGUCGAUUACCAAGUAUCUCCUCCAU GAAACA UAAAAUCCCCAAUUCAAUUUUGAAAUCCCUAAUUCUAUCAUCUUCUUC UCUUC CA G |||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| || CUUUGU GUUUUAGGGGUUAAGUUAAAAUUUUAGGGAUUAAGAUAGUAGAAGAAG AGAAG UU U UA C GU --- AGGGAUUAAGCAGGUAGAAGAUUGAAUUAGUUUGAAGGUAUCGAAAGUAUAGUAGAAAAUAGUAGGUACCAACGAAUUACUUCGAUACCUUGUUUCUGCAGUUGGUACGCUCCUUGCAAACCCUAACUCGACACUUCUAAGAAGGAGUGCACCUGGUGAAAACCAUAUUCAUAUAAG |
| Stem-loop sequence | ACGAAACAAUAAAAUCCCCAAUUCAAUUUUGAAAUCCCUAAUUCUAUCAUCUUCUUCACUCUUCUUCCAUAGCUAAUUGAAAUCCCAAAUUCUUCUAUCUUCCAUAUCUUCUUCUAUCAUUUUCUUUAAGUUUGAUUUCGAAAUCUCUAAUUUUAUCAUCUUCUUCCAUUGUUUGAUUUCGAAAUCCUAAUUCUUCCAUCUUCAUCCAUCUUUCUAGCUCCGUCGAUUACCAAGUAUCUCCUCCAUGUGAAUAUACUUAUACCAAAAGUGGUCCACGUGAGGAAGAAUCUUCACAGCUCAAUCCCAAACGUUCCUCGCAUGGUUGACGUCUUUGUUCCAUAGCUUCAUUAAGCAACCAUGGAUGAUAAAAGAUGAUAUGAAAGCUAUGGAAGUUUGAUUAAGUUAGAAGAUGGACGAAUUAGGGAUUGAAGAUGGAAGAAGAUGAUAGAAUUAGGGAUUUUAAAAUUGAAUUGGGGAUUUUGCUGUUUCAU |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AK230263.1 |
|
2.5 | Arabidopsis thaliana mRNA for 60S ribosomal protein - like, complete cds, clone: RAFL23-26-P10 | NA | coding protein | psRNATarget | |||||||||
| NM_118506.3 |
|
3.0 | Arabidopsis thaliana cytokinin response factor 2 (CRF2), mRNA | cytokinin response factor 2(CRF2) | coding protein | psRNATarget | |||||||||
| AY057475.1 |
|
3.0 | Arabidopsis thaliana AT4g23750/F9D16_220 mRNA, complete cds | NA | coding protein | psRNATarget |
| 1 | PMID:21940835
"High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis"; Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN; Genome Res. 22:163-176(2012). |