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BaseInfo

ncRNA ID gma-miR171b-5p
Species Glycine max
Class miRNA
Genome position chr4:46988579-46988670 [+]
Reference genome v1.0
Source miRBase
Length 23
Mature sequence(if miRNA) 6 - ACGGCGUGAUAUUGGUACGGCUC - 28
Stem-loop(if miRNA) ---      C  C           A      A        CAACCAU
   UAGACA GG GUGAUAUUGGU CGGCUC UCUUAAUU       U
   |||||| || ||||||||||| |||||| ||||||||
   GUUUGU UC CACUAUAACUA GCCGAG AGAGUUAA       A
UUC      -  U           A      C        CAACUAU
Stem-loop sequence UAGACACGGCGUGAUAUUGGUACGGCUCAUCUUAAUUCAACCAUUAUAUCAACAAUUGAGACGAGCCGAAUCAAUAUCACUCUUGUUUGCUU

Reference

1 PMID:18402695
"Novel and nodulation-regulated microRNAs in soybean roots";
Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O;
BMC Genomics. 9:160(2008).
2 PMID:20122185
"Prediction of novel miRNAs and associated target genes in Glycine max";
Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G;
BMC Bioinformatics. 11 Suppl 1:S14(2010).
3 PMID:21751852
"Transcriptional analysis of soybean root response to Fusarium virguliforme, the causal agent of sudden death syndrome";
Radwan O, Liu Y, Clough SJ;
Mol Plant Microbe Interact. 24:958-972(2011).