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BaseInfo

ncRNA ID	gma-miR5033
Species	Glycine max
Class	miRNA
Genome position	chr4:44236878-44237028 [+]
Reference genome	v1.0
Source	miRBase
Length	21
Mature sequence(if miRNA)	61 - GGCUGUACAAAAGGAAACUAC - 81
Stem-loop(if miRNA)	-------     -     --- CAA  AGCCAUGUGUGUUAGAUGAUGUUUGGAAAUGAGAAGAAAACCGUGGCUGUACAA        GUGUU UUUUU   U   GC                                                      A        ||||| |||||   |   ||                                                      A        UGUAG GGUAG   A   CU                                                      G GAAUCUG     G     UAA ---  AAAAAAAGAGUAGAAUGUCAACCUGCCGUUACAAACAAAACGCUUUCAUCAAAG
Stem-loop sequence	GUGUUUUUUUUCAAGCAGCCAUGUGUGUUAGAUGAUGUUUGGAAAUGAGAAGAAAACCGUGGCUGUACAAAAGGAAACUACUUUCGCAAAACAAACAUUGCCGUCCAACUGUAAGAUGAGAAAAAAAUCAAAUGAUGGGGAUGUGUCUAAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_006578664.2	ncRNA:21   CAUCAAAGGAAAACAUGUCGG   1   ||||||||||||||||||||| targets:230   GUAGUUUCCUUUUGUACAGCC   250 Target Full Sequence	0.0	PREDICTED: Glycine max ADP-ribosylation factor GTPase-activating protein AGD1-like (LOC100797073), mRNA	ADP-ribosylation factor GTPase-activating protein AGD1-like(LOC100797073)	coding protein	psRNATarget
BT096635.1	ncRNA:21   CAUCAAAGGAAAACAUGUCGG   1   **|*|||||||||||||||=| targets:95   AAAAUUUCCUUUUGUACAGUC   115 Target Full Sequence	2.5	Soybean clone JCVI-FLGm-25P11 unknown mRNA	NA	coding protein	psRNATarget
XM_014763309.1	ncRNA:21   CAUCAAAGGAAAACAUGUCGG   1   ****||||||||||||||||= targets:3218   AACUUUUCCUUUUGUACAGCU   3238 Target Full Sequence	3.0	PREDICTED: Glycine max pumilio homolog 4-like (LOC100798281), transcript variant X2, mRNA	pumilio homolog 4-like(LOC100798281)	coding protein	psRNATarget
XM_006606200.2	ncRNA:21   CAUCAAAGGAAAACAUGUCGG   1   ****||||||||||||||||= targets:3250   AACUUUUCCUUUUGUACAGCU   3270 Target Full Sequence	3.0	PREDICTED: Glycine max pumilio homolog 4-like (LOC100776550), transcript variant X3, mRNA	pumilio homolog 4-like(LOC100776550)	coding protein	psRNATarget
XM_006606199.2	ncRNA:21   CAUCAAAGGAAAACAUGUCGG   1   ****||||||||||||||||= targets:3253   AACUUUUCCUUUUGUACAGCU   3273 Target Full Sequence	3.0	PREDICTED: Glycine max pumilio homolog 4-like (LOC100776550), transcript variant X1, mRNA	pumilio homolog 4-like(LOC100776550)	coding protein	psRNATarget
XM_006606198.2	ncRNA:21   CAUCAAAGGAAAACAUGUCGG   1   ****||||||||||||||||= targets:3272   AACUUUUCCUUUUGUACAGCU   3292 Target Full Sequence	3.0	PREDICTED: Glycine max pumilio homolog 4-like (LOC100776550), transcript variant X2, mRNA	pumilio homolog 4-like(LOC100776550)	coding protein	psRNATarget
XM_006589346.2	ncRNA:21   CAUCAAAGGAAAACAUGUCGG   1   ****||||||||||||||||= targets:3280   AACUUUUCCUUUUGUACAGCU   3300 Target Full Sequence	3.0	PREDICTED: Glycine max pumilio homolog 4-like (LOC100798281), transcript variant X3, mRNA	pumilio homolog 4-like(LOC100798281)	coding protein	psRNATarget
XM_006589345.2	ncRNA:21   CAUCAAAGGAAAACAUGUCGG   1   ****||||||||||||||||= targets:3285   AACUUUUCCUUUUGUACAGCU   3305 Target Full Sequence	3.0	PREDICTED: Glycine max pumilio homolog 4-like (LOC100798281), transcript variant X1, mRNA	pumilio homolog 4-like(LOC100798281)	coding protein	psRNATarget

Reference

1	PMID:21751852 "Transcriptional analysis of soybean root response to Fusarium virguliforme, the causal agent of sudden death syndrome"; Radwan O, Liu Y, Clough SJ; Mol Plant Microbe Interact. 24:958-972(2011).