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BaseInfo

ncRNA ID gma-miR1516c
Species Glycine max
Class miRNA
Genome position chr4:37000480-37000602 [+]
Reference genome v1.0
Source miRBase
Length 24
Mature sequence(if miRNA) 11 - AAUGUCUGGGCUUAGCGAGGCGGU - 34
Stem-loop(if miRNA) UGA   UG   A G   GG       G      U A             CUUUU   UUU  U
   UCA  GCA U UCU  GCUUAGC AGGCGG C CGAGCUUAGCGUG     GGG   CU C
   |||  ||| | |||  ||||||| |||||| | |||||||||||||     |||   ||
   AGU  CGU G AGG  CGAAUCG UCCGUU G GUUCGAAUCGUGC     UCC   GG A
CCG   UG   - G   AG       -      C A             -UUCU   --U  U
Stem-loop sequence UGAUCAUGGCAAUGUCUGGGCUUAGCGAGGCGGUCACGAGCUUAGCGUGCUUUUGGGUUUCUUCAUGGUCCUUCUUCGUGCUAAGCUUGAGCUUGCCUGCUAAGCGAGGAGGUGCGUUGAGCC

Reference

1 PMID:22156213
"MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs";
Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC;
Genes Dev. 25:2540-2553(2011).