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BaseInfo

ncRNA ID	gma-miR4397-5p
Species	Glycine max
Class	miRNA
Genome position	chr4:35428794-35428950 [-]
Reference genome	v1.0
Source	miRBase
Length	22
Mature sequence(if miRNA)	119 - CAUCGUUGACGCUGACUGUACG - 140
Stem-loop(if miRNA)	U         G          G           U U        CAU     UC   A   GGAAGG         ACAA  UUUCUAGUG UCGCCGCAUC UUGACGCUGAC G ACGUACUU   CUCCU  AGA UUC      AUGCCAUAA    G  ||||||||| |||||||||| ||||||||||| | ||||||||   |||||  ||| |||      |||||||||  AAAGAUCAU AGCGGUGUAG AACUGUGACUG C UGCAUGGG   GAGGG  UUU AAG      UAUGGUAUU    C A         A          A           C C        AAU     UU   A   -----A         ACAC
Stem-loop sequence	UUUUCUAGUGGUCGCCGCAUCGUUGACGCUGACUGUACGUACUUCAUCUCCUUCAGAAUUCGGAAGGAUGCCAUAAACAAGCCACAUUAUGGUAUAGAAAUUUUUGGGAGUAAGGGUACGUCCCGUCAGUGUCAAAGAUGUGGCGAAUACUAGAAAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_006579902.2	ncRNA:22   GCAUGUCAGUCGCAGUUGCUAC   1   ***|||||*||||||||*|||| targets:595   AAGACAGUAAGCGUCAAAGAUG   616 Target Full Sequence	2.5	PREDICTED: Glycine max protein CROWDED NUCLEI 4-like (LOC100783880), transcript variant X2, mRNA	protein CROWDED NUCLEI 4-like(LOC100783880)	coding protein	psRNATarget
XM_006579901.2	ncRNA:22   GCAUGUCAGUCGCAGUUGCUAC   1   ***|||||*||||||||*|||| targets:595   AAGACAGUAAGCGUCAAAGAUG   616 Target Full Sequence	2.5	PREDICTED: Glycine max protein CROWDED NUCLEI 4-like (LOC100783880), transcript variant X3, mRNA	protein CROWDED NUCLEI 4-like(LOC100783880)	coding protein	psRNATarget
XM_003524653.3	ncRNA:22   GCAUGUCAGUCGCAGUUGCUAC   1   ***|||||*||||||||*|||| targets:595   AAGACAGUAAGCGUCAAAGAUG   616 Target Full Sequence	2.5	PREDICTED: Glycine max protein CROWDED NUCLEI 4-like (LOC100783880), transcript variant X1, mRNA	protein CROWDED NUCLEI 4-like(LOC100783880)	coding protein	psRNATarget

Reference

1	PMID:20122185 "Prediction of novel miRNAs and associated target genes in Glycine max"; Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G; BMC Bioinformatics. 11 Suppl 1:S14(2010).
2	PMID:21663675 "Identification of novel soybean microRNAs involved in abiotic and biotic stresses"; Kulcheski FR, de Oliveira LF, Molina LG, Almerao MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimaraes FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R; BMC Genomics. 12:307(2011).