ncRNA ID | gma-miR4397-3p |
Species | Glycine max |
Class | miRNA |
Genome position | chr4:35428794-35428950 [-] |
Reference genome | v1.0 |
Source | miRBase |
Length | 22 |
Mature sequence(if miRNA) | 7 - UGUCAAAGAUGUGGCGAAUACU - 28 |
Stem-loop(if miRNA) |
U         G          G           U U        CAU     UC   A   GGAAGG         ACAA  UUUCUAGUG UCGCCGCAUC UUGACGCUGAC G ACGUACUU   CUCCU  AGA UUC      AUGCCAUAA    G  ||||||||| |||||||||| ||||||||||| | ||||||||   |||||  ||| |||      |||||||||  AAAGAUCAU AGCGGUGUAG AACUGUGACUG C UGCAUGGG   GAGGG  UUU AAG      UAUGGUAUU    C A         A          A           C C        AAU     UU   A   -----A         ACAC |
Stem-loop sequence | UUUUCUAGUGGUCGCCGCAUCGUUGACGCUGACUGUACGUACUUCAUCUCCUUCAGAAUUCGGAAGGAUGCCAUAAACAAGCCACAUUAUGGUAUAGAAAUUUUUGGGAGUAAGGGUACGUCCCGUCAGUGUCAAAGAUGUGGCGAAUACUAGAAAA |
1 | PMID:20122185
"Prediction of novel miRNAs and associated target genes in Glycine max"; Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G; BMC Bioinformatics. 11 Suppl 1:S14(2010). |
2 | PMID:21663675
"Identification of novel soybean microRNAs involved in abiotic and biotic stresses"; Kulcheski FR, de Oliveira LF, Molina LG, Almerao MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimaraes FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R; BMC Genomics. 12:307(2011). |