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BaseInfo

ncRNA ID gma-miR4397-3p
Species Glycine max
Class miRNA
Genome position chr4:35428794-35428950 [-]
Reference genome v1.0
Source miRBase
Length 22
Mature sequence(if miRNA) 7 - UGUCAAAGAUGUGGCGAAUACU - 28
Stem-loop(if miRNA) U         G          G           U U        CAU     UC   A   GGAAGG         ACAA
 UUUCUAGUG UCGCCGCAUC UUGACGCUGAC G ACGUACUU   CUCCU  AGA UUC      AUGCCAUAA    G
 ||||||||| |||||||||| ||||||||||| | ||||||||   |||||  ||| |||      |||||||||
 AAAGAUCAU AGCGGUGUAG AACUGUGACUG C UGCAUGGG   GAGGG  UUU AAG      UAUGGUAUU    C
A         A          A           C C        AAU     UU   A   -----A         ACAC
Stem-loop sequence UUUUCUAGUGGUCGCCGCAUCGUUGACGCUGACUGUACGUACUUCAUCUCCUUCAGAAUUCGGAAGGAUGCCAUAAACAAGCCACAUUAUGGUAUAGAAAUUUUUGGGAGUAAGGGUACGUCCCGUCAGUGUCAAAGAUGUGGCGAAUACUAGAAAA

Reference

1 PMID:20122185
"Prediction of novel miRNAs and associated target genes in Glycine max";
Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G;
BMC Bioinformatics. 11 Suppl 1:S14(2010).
2 PMID:21663675
"Identification of novel soybean microRNAs involved in abiotic and biotic stresses";
Kulcheski FR, de Oliveira LF, Molina LG, Almerao MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimaraes FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R;
BMC Genomics. 12:307(2011).