ncRNA ID | gma-miR4377 |
Species | Glycine max |
Class | miRNA |
Genome position | chr4:16731847-16732014 [+] |
Reference genome | v1.0 |
Source | miRBase |
Length | 24 |
Mature sequence(if miRNA) | 144 - UACGUCAUCGCUGAAUGGAAGACG - 167 |
Stem-loop(if miRNA) |
UUUA         A         A     ---GACGAAC              UAAUCACU     A   G     CG      A     UCUUCUGUU AGUGAUGAC UGGCA          CACGUUAUUAUGUU        GACAC UCA UAUCA  UCAUUG G     ||||||||| ||||||||| |||||          ||||||||||||||        ||||| ||| |||||  ||||||     AGAAGGUAA UCGCUACUG AUCGU          GUGUAGUAGUGUAG        CUGUG AGU AUAGU  AGUAAU G -AGC         G         C     AUAUAUUACA              CACAAUAC     A   A     AU      G |
Stem-loop sequence | UUUAUCUUCUGUUAAGUGAUGACAUGGCAGACGAACCACGUUAUUAUGUUUAAUCACUGACACAUCAGUAUCACGUCAUUGAGGGUAAUGAUAUGAUAAUGAAGUGUCCAUAACACGAUGUGAUGAUGUGACAUUAUAUAUGCUACGUCAUCGCUGAAUGGAAGACGA |
1 | PMID:20122185
"Prediction of novel miRNAs and associated target genes in Glycine max"; Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G; BMC Bioinformatics. 11 Suppl 1:S14(2010). |