Search result

BaseInfo

ncRNA ID	gma-miR1522
Species	Glycine max
Class	miRNA
Genome position	chr4:12819263-12819450 [+]
Reference genome	v1.0
Source	miRBase
Length	20
Mature sequence(if miRNA)	11 - UUUAUUGCUUAAAAUGAAAU - 30
Stem-loop(if miRNA)	UACAGACAAAU     GC       G       - C      CU   -----AAUGC    AAUAGUUAAUGUUUUAUAAUUAGUAUGAUUACCCG            UUAUU  UUAAAAU AAAUUAA C AACUUU  UAA          AUAA                                   U            |||||  ||||||| ||||||| | ||||||  |||          ||||                                   G            AAUAA  AAUUUUA UUUAAUU G UUGAGA  AUU          AGUG                                   U -AUAAAUAAUU     GA       A       U A      AU   AAUAAAAGUU    AAAUAGUACUUAAUCUUUUUAGUGUUACAAUGUAA
Stem-loop sequence	UACAGACAAAUUUAUUGCUUAAAAUGAAAUUAACCAACUUUCUUAAAAUGCAUAAAAUAGUUAAUGUUUUAUAAUUAGUAUGAUUACCCGUGUAAUGUAACAUUGUGAUUUUUCUAAUUCAUGAUAAAGUGAUUGAAAAUAAUUAUAAGAGUUAGUUUAAUUUAAUUUUAAAGAAUAAUUAAUAAAUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_006596475.2	ncRNA:20   UAAAGUAAAAUUCGUUAUUU   1   ||||*||||||||*|||||| targets:1166   AUUUAAUUUUAAGAAAUAAA   1185 Target Full Sequence	2.5	PREDICTED: Glycine max GDSL esterase/lipase EXL3-like (LOC102668807), mRNA	GDSL esterase/lipase EXL3-like(LOC102668807)	coding protein	psRNATarget

Reference

1	PMID:18402695 "Novel and nodulation-regulated microRNAs in soybean roots"; Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O; BMC Genomics. 9:160(2008).