| ncRNA ID | ath-miR169b-5p |
| Species | Arabidopsis thaliana |
| Class | miRNA |
| Genome position | chr5:8527469-8527649 [+] |
| Reference genome | TAIR10 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 43 - CAGCCAAGGAUGACUUGCCGG - 63 |
| Stem-loop(if miRNA) |
C U AA AGU U U C - UG CGU AAC G A GU CCCAA GGAG AG UUGCAUGA GGAG AGAGUA AAUG AGCC AAGGA ACUUGCCGGAA UGUU CAU CAUAUGA UAAU G ||||| |||| || |||||||| |||| |||||| |||| |||| ||||| ||||||||||| |||| ||| ||||||| |||| GGGUU CCUU UC AACGUACU CUUC UCUCGU UUAC UCGG UUCCU UGAACGGUCUU ACAA GUA GUGUAUU AUUA A - - -A CUU - U A C GU UAU --- - A GU |
| Stem-loop sequence | CCCAACGGAGUAGAAUUGCAUGAAGUGGAGUAGAGUAUAAUGCAGCCAAGGAUGACUUGCCGGAACGUUGUUAACCAUGCAUAUGAAUAAUGUGAUGAUUAAUUAUGUGAUGAACAUAUUUCUGGCAAGUUGUCCUUCGGCUACAUUUUGCUCUCUUCUUCUCAUGCAAACUUUCCUUGGG |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| BX813919.1 |
|
1.0 | Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB47ZG01 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) | NA | coding protein | psRNATarget | |||||||||
| AY088950.1 |
|
1.0 | Arabidopsis thaliana clone 106674 mRNA, complete sequence | NA | coding protein | psRNATarget | |||||||||
| NM_202121.2 |
|
1.0 | Arabidopsis thaliana nuclear factor Y, subunit A8 (NF-YA8), mRNA | nuclear factor Y, subunit A8(NF-YA8) | coding protein | psRNATarget | |||||||||
| NM_101621.3 |
|
1.0 | Arabidopsis thaliana nuclear factor Y, subunit A8 (NF-YA8), mRNA | nuclear factor Y, subunit A8(NF-YA8) | coding protein | psRNATarget | |||||||||
| NM_001198095.1 |
|
1.0 | Arabidopsis thaliana nuclear factor Y, subunit A8 (NF-YA8), mRNA | nuclear factor Y, subunit A8(NF-YA8) | coding protein | psRNATarget | |||||||||
| BX815988.1 |
|
1.0 | Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH20ZH03 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) | NA | coding protein | psRNATarget | |||||||||
| NM_202122.2 |
|
1.0 | Arabidopsis thaliana nuclear factor Y, subunit A8 (NF-YA8), mRNA | nuclear factor Y, subunit A8(NF-YA8) | coding protein | psRNATarget | |||||||||
| AF386957.1 |
|
2.0 | Arabidopsis thaliana Unknown protein (F15I1.26) mRNA, complete cds | NA | coding protein | psRNATarget | |||||||||
| NM_104294.3 |
|
2.0 | Arabidopsis thaliana nuclear factor Y, subunit A5 (NF-YA5), mRNA | nuclear factor Y, subunit A5(NF-YA5) | coding protein | psRNATarget | |||||||||
| AY140028.1 |
|
2.0 | Arabidopsis thaliana CCAAT-binding factor B subunit-like protein, putative (At1g72830) mRNA, complete cds | NA | coding protein | psRNATarget | |||||||||
| NM_001338098.1 |
|
2.0 | Arabidopsis thaliana nuclear factor Y, subunit A6 (NF-YA6), mRNA | nuclear factor Y, subunit A6(NF-YA6) | coding protein | psRNATarget | |||||||||
| Y13722.1 |
|
2.0 | Arabidopsis thaliana mRNA for Hap2c transcription factor | NA | coding protein | psRNATarget | |||||||||
| NM_001334553.1 |
|
2.0 | Arabidopsis thaliana nuclear factor Y, subunit A3 (NF-YA3), mRNA | nuclear factor Y, subunit A3(NF-YA3) | coding protein | psRNATarget | |||||||||
| AY057539.1 |
|
2.0 | Arabidopsis thaliana At1g72830/F3N23_3 mRNA, complete cds | NA | coding protein | psRNATarget | |||||||||
| NM_001036195.5 |
|
2.0 | Arabidopsis thaliana nuclear factor Y, subunit A3 (NF-YA3), mRNA | nuclear factor Y, subunit A3(NF-YA3) | coding protein | psRNATarget | |||||||||
| NM_112256.3 |
|
2.0 | Arabidopsis thaliana nuclear factor Y, subunit A6 (NF-YA6), mRNA | nuclear factor Y, subunit A6(NF-YA6) | coding protein | psRNATarget | |||||||||
| NM_105941.8 |
|
2.0 | Arabidopsis thaliana nuclear factor Y, subunit A3 (NF-YA3), mRNA | nuclear factor Y, subunit A3(NF-YA3) | coding protein | psRNATarget |
| 1 | PMID:15200956
"Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"; Jones-Rhoades MW, Bartel DP; Mol Cell. 14:787-799(2004). |
| 2 | PMID:15345049
"Prediction and identification of Arabidopsis thaliana microRNAs and their mRNA targets"; Wang XJ, Reyes JL, Chua NH, Gaasterland T; Genome Biol. 5:R65(2004). |
| 3 | PMID:16040653
"Expression of Arabidopsis MIRNA genes"; Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC; Plant Physiol. 138:2145-2154(2005). |
| 4 | PMID:16954541
"MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant"; Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC; Genome Res. 16:1276-1288(2006). |
| 5 | PMID:17182867
"A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"; Rajagopalan R, Vaucheret H, Trejo J, Bartel DP; Genes Dev. 20:3407-3425(2006). |
| 6 | PMID:19815687
"Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis"; Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW; J Exp Bot. 61:165-177(2010). |