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BaseInfo

ncRNA ID	gma-miR5775
Species	Glycine max
Class	miRNA
Genome position	chr4:9764080-9764210 [-]
Reference genome	v1.0
Source	miRBase
Length	21
Mature sequence(if miRNA)	11 - AUAAGCUCUUUUGAGAGCUUC - 31
Stem-loop(if miRNA)	AA        ---A     CUUU  UUUUUGGUAAACUACACUUUCCCUCUUCAAAAGUUCUUAUGGA   AUUCUGGA    GUAGU    CC                                           A   ||||||||    |||||    ||   UGAGAUCU    GAGAG    UU                                           A UA        CUUC     ----  UUCUCGAAUACCGAACAUACGUUUGUCUGUAGAAAUACACAGA
Stem-loop sequence	AAAUUCUGGAAGUAGUCUUUCCUUUUUGGUAAACUACACUUUCCCUCUUCAAAAGUUCUUAUGGAAAAGACACAUAAAGAUGUCUGUUUGCAUACAAGCCAUAAGCUCUUUUGAGAGCUUCUCUAGAGUAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_014774046.1	ncRNA:21   CUUCGAGAGUUUUCUCGAAUA   1   ||||||||||||||||||||| targets:651   GAAGCUCUCAAAAGAGCUUAU   671 Target Full Sequence	0.0	PREDICTED: Glycine max exosome complex component RRP41-like (LOC106798118), transcript variant X2, mRNA	exosome complex component RRP41-like(LOC106798118)	coding protein	psRNATarget
XM_014774047.1	ncRNA:21   CUUCGAGAGUUUUCUCGAAUA   1   ||||||||||||||||||||| targets:830   GAAGCUCUCAAAAGAGCUUAU   850 Target Full Sequence	0.0	PREDICTED: Glycine max exosome complex component RRP41-like (LOC106798118), transcript variant X3, mRNA	exosome complex component RRP41-like(LOC106798118)	coding protein	psRNATarget
XM_014774048.1	ncRNA:21   CUUCGAGAGUUUUCUCGAAUA   1   ||||||||||||||||||||| targets:849   GAAGCUCUCAAAAGAGCUUAU   869 Target Full Sequence	0.0	PREDICTED: Glycine max exosome complex component RRP41-like (LOC106798118), transcript variant X4, mRNA	exosome complex component RRP41-like(LOC106798118)	coding protein	psRNATarget
XM_014774045.1	ncRNA:21   CUUCGAGAGUUUUCUCGAAUA   1   ||||||||||||||||||||| targets:927   GAAGCUCUCAAAAGAGCUUAU   947 Target Full Sequence	0.0	PREDICTED: Glycine max exosome complex component RRP41-like (LOC106798118), transcript variant X1, mRNA	exosome complex component RRP41-like(LOC106798118)	coding protein	psRNATarget
XM_003535720.3	ncRNA:21   CUUCGAGAGUUUUCUCGAAUA   1   *|||=|*|||||||||||||* targets:665   AAAGUUAUCAAAAGAGCUUAG   685 Target Full Sequence	3.0	PREDICTED: Glycine max FAD synthetase 1, chloroplastic (LOC100808911), mRNA	FAD synthetase 1, chloroplastic(LOC100808911)	coding protein	psRNATarget

Reference

1

PMID:22156213 "MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs"; Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC; Genes Dev. 25:2540-2553(2011).