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BaseInfo

ncRNA ID	gma-miR4403
Species	Glycine max
Class	miRNA
Genome position	chr4:626883-626986 [+]
Reference genome	v1.0
Source	miRBase
Length	24
Mature sequence(if miRNA)	4 - ACGGACACCGAACACGACACGGAC - 27
Stem-loop(if miRNA)	G        A       CG   ACG    CGUGAAUACCUGUCAAAC GACAC GACACCGA CACGACA  GAC   GACA                  A ||||| |||||||| |||||||  |||   ||||                  C CUGUG CUGUGGCU GUGUUGU  CUG   GGGC                  A      G        -       AG   --C    ACAGGCCCAACUUAAACU
Stem-loop sequence	GACACGGACACCGAACACGACACGGACACGGACACGUGAAUACCUGUCAAACACAUCAAAUUCAACCCGGACACGGGCGUCGAUGUUGUGUCGGUGUCGGUGUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_003553459.3	ncRNA:24   CAGGCACAGCACAAGCCACAGGCA   1   *||||||||||||*|||||||||| targets:4003   AUCCGUGUCGUGUCCGGUGUCCGU   4026 Target Full Sequence	1.5	PREDICTED: Glycine max probable LRR receptor-like serine/threonine-protein kinase At4g08850 (LOC100809137), mRNA	probable LRR receptor-like serine/threonine-protein kinase At4g08850(LOC100809137)	coding protein	psRNATarget
XM_006589307.2	ncRNA:24   CAGGCACAGCACAAGCCACAGGCA   1   *||=|||||||||*|||||||||| targets:728   AUCUGUGUCGUGUCCGGUGUCCGU   751 Target Full Sequence	1.5	PREDICTED: Glycine max uncharacterized LOC100791948 (LOC100791948), mRNA	uncharacterized LOC100791948(LOC100791948)	coding protein	psRNATarget
XM_003528200.3	ncRNA:24   CAGGCACAGCACAAGCCACAGGCA   1   ****|*||||*||||||||||||| targets:1013   AGGAGGGUCGAGUUCGGUGUCCGU   1036 Target Full Sequence	2.0	PREDICTED: Glycine max UDP-glycosyltransferase 89B1 (LOC100779428), mRNA	UDP-glycosyltransferase 89B1(LOC100779428)	coding protein	psRNATarget
XM_003545133.3	ncRNA:24   CAGGCACAGCACAAGCCACAGGCA   1   **|=*||||||||*|||||||||* targets:1135   CCCUUUGUCGUGUCCGGUGUCCGA   1158 Target Full Sequence	2.5	PREDICTED: Glycine max probable polygalacturonase At3g15720 (LOC100787282), mRNA	probable polygalacturonase At3g15720(LOC100787282)	coding protein	psRNATarget
XM_003553459.3	ncRNA:24   CAGGCA-CAGCACAAGCCACAGGCA   1   ||||*|-|||||||||||||||||* targets:3893   GUCCCUUGUCGUGUUCGGUGUCCGA   3917 Target Full Sequence	3.0	PREDICTED: Glycine max probable LRR receptor-like serine/threonine-protein kinase At4g08850 (LOC100809137), mRNA	probable LRR receptor-like serine/threonine-protein kinase At4g08850(LOC100809137)	coding protein	psRNATarget

Reference

1	PMID:20122185 "Prediction of novel miRNAs and associated target genes in Glycine max"; Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G; BMC Bioinformatics. 11 Suppl 1:S14(2010).