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BaseInfo

ncRNA ID	gma-miR1516a-5p
Species	Glycine max
Class	miRNA
Genome position	chr3:47035753-47035863 [+]
Reference genome	v1.0
Source	miRBase
Length	23
Mature sequence(if miRNA)	13 - CAAGUUAUAAGCUCUUUUGAGAG - 35
Stem-loop(if miRNA)	CA                                          A A          UGUUUGGAUACAAGUUAUAAGCUCUUUUGAGAGCUUCUCUAC G AAAUAUAU   |||||||||||||||||||||||||||||||||||||||||| | |||||||U   ACAAACCUAUGUUCGGUAUUCGAGAAAACUCUCGAAGAGAUG C UUUAUAUA AG                                          G C
Stem-loop sequence	CAUGUUUGGAUACAAGUUAUAAGCUCUUUUGAGAGCUUCUCUACAGAAAAUAUAUUAUAUAUUUCCGGUAGAGAAGCUCUCAAAAGAGCUUAUGGCUUGUAUCCAAACAGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_014774046.1	ncRNA:23   GAGAGUUUUCUCGAAUAUUGAAC   1   ||||||||||||||||||||||| targets:655   CUCUCAAAAGAGCUUAUAACUUG   677 Target Full Sequence	0.0	PREDICTED: Glycine max exosome complex component RRP41-like (LOC106798118), transcript variant X2, mRNA	exosome complex component RRP41-like(LOC106798118)	coding protein	psRNATarget
XM_014774047.1	ncRNA:23   GAGAGUUUUCUCGAAUAUUGAAC   1   ||||||||||||||||||||||| targets:834   CUCUCAAAAGAGCUUAUAACUUG   856 Target Full Sequence	0.0	PREDICTED: Glycine max exosome complex component RRP41-like (LOC106798118), transcript variant X3, mRNA	exosome complex component RRP41-like(LOC106798118)	coding protein	psRNATarget
XM_014774048.1	ncRNA:23   GAGAGUUUUCUCGAAUAUUGAAC   1   ||||||||||||||||||||||| targets:853   CUCUCAAAAGAGCUUAUAACUUG   875 Target Full Sequence	0.0	PREDICTED: Glycine max exosome complex component RRP41-like (LOC106798118), transcript variant X4, mRNA	exosome complex component RRP41-like(LOC106798118)	coding protein	psRNATarget
XM_014774045.1	ncRNA:23   GAGAGUUUUCUCGAAUAUUGAAC   1   ||||||||||||||||||||||| targets:931   CUCUCAAAAGAGCUUAUAACUUG   953 Target Full Sequence	0.0	PREDICTED: Glycine max exosome complex component RRP41-like (LOC106798118), transcript variant X1, mRNA	exosome complex component RRP41-like(LOC106798118)	coding protein	psRNATarget

Reference

1	PMID:18402695 "Novel and nodulation-regulated microRNAs in soybean roots"; Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O; BMC Genomics. 9:160(2008).
2	PMID:21751852 "Transcriptional analysis of soybean root response to Fusarium virguliforme, the causal agent of sudden death syndrome"; Radwan O, Liu Y, Clough SJ; Mol Plant Microbe Interact. 24:958-972(2011).