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BaseInfo

ncRNA ID gma-miR5773
Species Glycine max
Class miRNA
Genome position chr3:46862488-46862660 [+]
Reference genome v1.0
Source miRBase
Length 22
Mature sequence(if miRNA) 11 - UUUUUAAAAGGUUCAGUUAGGU - 32
Stem-loop(if miRNA) - A   UC                          C             A     UCAAUU        ----   -A   UCAUU       A
 G UUU  UUAUUUUUAAAAGGUUCAGUUAGGUC UUUAUUUUUUAAA UGGGU      UGGUCCCA    CUU  AAC     UUUUGAA A
 | |||  |||||||||||||||||||||||||| ||||||||||||| |||||      ||||||||    |||  |||     |||||||
 C AGG  AAUAAAAAUUUUCCAAGUUAAUCCAG AAAUAAAAAAUUU ACCCA      ACCAGGGU    GAA  UUG     GAAGCUU U
A C   GA                          A             A     ------        AAAA   GG   ---UC       G
Stem-loop sequence GAUUUUCUUAUUUUUAAAAGGUUCAGUUAGGUCCUUUAUUUUUUAAAAUGGGUUCAAUUUGGUCCCACUUAAACUCAUUUUUUGAAAAUGUUCGAAGCUGUUGGAAGAAAAUGGGACCAACCCAAUUUAAAAAAUAAAAGACCUAAUUGAACCUUUUAAAAAUAAAGGGACCA

Reference

1 PMID:22156213
"MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs";
Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC;
Genes Dev. 25:2540-2553(2011).