Search result

BaseInfo

ncRNA ID gma-miR166p
Species Glycine max
Class miRNA
Genome position chr3:39519832-39519953 [-]
Reference genome v1.0
Source miRBase
Length 20
Mature sequence(if miRNA) 10 - UCGGACCAGGCUUCAUUCCC - 29
Stem-loop(if miRNA) AAA    G         UCA              AUUCAU   UUCAAUUAGUCUCAAACACG
   AGUU AGGGGAAUG   UCUGGUUCGAGAUC      UUA                    A
   |||| |||||||||   ||||||||||||||      |||                    A
   UCGA UCCCCUUAC   GGACCAGGCUUUAG      UGU                    A
-UA    G         UUC              ------   GUUUUCUUGACCCAGGCGUA
Stem-loop sequence AAAAGUUGAGGGGAAUGUCAUCUGGUUCGAGAUCAUUCAUUUAUUCAAUUAGUCUCAAACACGAAAAUGCGGACCCAGUUCUUUUGUGUGAUUUCGGACCAGGCUUCAUUCCCCUGAGCUAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014779133.1
ncRNA:20   CCCUUACUUCGGACCAGGCU   1
  *||||||||||||||||||=
targets:339   UGGAAUGAAGCCUGGUCCGG   358

1.0 PREDICTED: Glycine max homeobox-leucine zipper protein ATHB-15-like (LOC100800697), transcript variant X4, mRNA homeobox-leucine zipper protein ATHB-15-like(LOC100800697) coding protein psRNATarget
XM_014779132.1
ncRNA:20   CCCUUACUUCGGACCAGGCU   1
  *||||||||||||||||||=
targets:499   UGGAAUGAAGCCUGGUCCGG   518

1.0 PREDICTED: Glycine max homeobox-leucine zipper protein ATHB-15-like (LOC100800697), transcript variant X3, mRNA homeobox-leucine zipper protein ATHB-15-like(LOC100800697) coding protein psRNATarget
XM_014777646.1
ncRNA:20   CCCUUACUUCGGACCAGGCU   1
  *||||||||||||||||||=
targets:628   UGGAAUGAAGCCUGGUCCGG   647

1.0 PREDICTED: Glycine max homeobox-leucine zipper protein ATHB-15-like (LOC100775524), transcript variant X2, mRNA homeobox-leucine zipper protein ATHB-15-like(LOC100775524) coding protein psRNATarget
XM_014777647.1
ncRNA:20   CCCUUACUUCGGACCAGGCU   1
  *||||||||||||||||||=
targets:629   UGGAAUGAAGCCUGGUCCGG   648

1.0 PREDICTED: Glycine max homeobox-leucine zipper protein ATHB-15-like (LOC100775524), transcript variant X3, mRNA homeobox-leucine zipper protein ATHB-15-like(LOC100775524) coding protein psRNATarget
XM_003530064.2
ncRNA:20   CCCUUACUUCGGACCAGGCU   1
  *||||||||||||||||||=
targets:651   UGGAAUGAAGCCUGGUCCGG   670

1.0 PREDICTED: Glycine max homeobox-leucine zipper protein ATHB-15-like (LOC100775524), transcript variant X1, mRNA homeobox-leucine zipper protein ATHB-15-like(LOC100775524) coding protein psRNATarget
XM_003531605.3
ncRNA:20   CCCUUACUUCGGACCAGGCU   1
  *||||||||||||||||||=
targets:789   UGGAAUGAAGCCUGGUCCGG   808

1.0 PREDICTED: Glycine max homeobox-leucine zipper protein ATHB-15-like (LOC100800697), transcript variant X2, mRNA homeobox-leucine zipper protein ATHB-15-like(LOC100800697) coding protein psRNATarget
XM_006585513.2
ncRNA:20   CCCUUACUUCGGACCAGGCU   1
  *||||||||||||||||||=
targets:792   UGGAAUGAAGCCUGGUCCGG   811

1.0 PREDICTED: Glycine max homeobox-leucine zipper protein ATHB-15-like (LOC100800697), transcript variant X1, mRNA homeobox-leucine zipper protein ATHB-15-like(LOC100800697) coding protein psRNATarget
XM_003530061.3
ncRNA:20   CCCUUACUUCGGACCAGGCU   1
  *||||||||||||||||||=
targets:905   UGGAAUGAAGCCUGGUCCGG   924

1.0 PREDICTED: Glycine max homeobox-leucine zipper protein ATHB-15-like (LOC100819365), mRNA homeobox-leucine zipper protein ATHB-15-like(LOC100819365) coding protein psRNATarget
XM_003531604.3
ncRNA:20   CCCUUACUUCGGACCAGGCU   1
  *||||||||||||||||||=
targets:978   UGGAAUGAAGCCUGGUCCGG   997

1.0 PREDICTED: Glycine max homeobox-leucine zipper protein ATHB-15 (LOC100800165), mRNA homeobox-leucine zipper protein ATHB-15(LOC100800165) coding protein psRNATarget
XM_003526448.3
ncRNA:20   CCCUUACUUCGGACCAGGCU   1
  *||=|||||||||||||||=
targets:576   UGGGAUGAAGCCUGGUCCGG   595

2.0 PREDICTED: Glycine max homeobox-leucine zipper protein ATHB-15-like (LOC100797291), mRNA homeobox-leucine zipper protein ATHB-15-like(LOC100797291) coding protein psRNATarget
XM_003524945.3
ncRNA:20   CCCUUACUUCGGACCAGGCU   1
  *||=|||||||||||||||=
targets:591   UGGGAUGAAGCCUGGUCCGG   610

2.0 PREDICTED: Glycine max homeobox-leucine zipper protein ATHB-14-like (LOC100806322), mRNA homeobox-leucine zipper protein ATHB-14-like(LOC100806322) coding protein psRNATarget
XM_003522668.3
ncRNA:20   CCCUUACUUCGGACCAGGCU   1
  *||=|||||||||||||||=
targets:920   UGGGAUGAAGCCUGGUCCGG   939

2.0 PREDICTED: Glycine max homeobox-leucine zipper protein ATHB-8-like (LOC100815727), mRNA homeobox-leucine zipper protein ATHB-8-like(LOC100815727) coding protein psRNATarget
XM_003546207.3
ncRNA:20   CCCUUACUUCGGACCAGGCU   1
  *||=|||||||||||||||=
targets:930   UGGGAUGAAGCCUGGUCCGG   949

2.0 PREDICTED: Glycine max homeobox-leucine zipper protein ATHB-14-like (LOC100807428), mRNA homeobox-leucine zipper protein ATHB-14-like(LOC100807428) coding protein psRNATarget
XM_003532740.3
ncRNA:20   CCCUUACUUCGGACCAGGCU   1
  *||=|||||||||||||||=
targets:1066   UGGGAUGAAGCCUGGUCCGG   1085

2.0 PREDICTED: Glycine max homeobox-leucine zipper protein ATHB-14-like (LOC100807637), mRNA homeobox-leucine zipper protein ATHB-14-like(LOC100807637) coding protein psRNATarget
XM_003535030.3
ncRNA:20   CCCUUACUUCGGACCAGGCU   1
  *||=|||||||||||||||=
targets:1181   UGGGAUGAAGCCUGGUCCGG   1200

2.0 PREDICTED: Glycine max homeobox-leucine zipper protein ATHB-14-like (LOC100779499), transcript variant X2, mRNA homeobox-leucine zipper protein ATHB-14-like(LOC100779499) coding protein psRNATarget
XM_014761858.1
ncRNA:20   CCCUUACUUCGGACCAGGCU   1
  *||=|||||||||||||||=
targets:1187   UGGGAUGAAGCCUGGUCCGG   1206

2.0 PREDICTED: Glycine max homeobox-leucine zipper protein ATHB-14-like (LOC100779499), transcript variant X1, mRNA homeobox-leucine zipper protein ATHB-14-like(LOC100779499) coding protein psRNATarget
XM_003538102.3
ncRNA:20   CCCUUACUUCGGACCAGGCU   1
  *||=|||||||||||||||=
targets:1266   UGGGAUGAAGCCUGGUCCGG   1285

2.0 PREDICTED: Glycine max homeobox-leucine zipper protein REVOLUTA-like (LOC100804870), mRNA homeobox-leucine zipper protein REVOLUTA-like(LOC100804870) coding protein psRNATarget
XM_006592195.2
ncRNA:20   CCCUUACUUCGGACCAGGCU   1
  *||=|||||||||||||||=
targets:1292   UGGGAUGAAGCCUGGUCCGG   1311

2.0 PREDICTED: Glycine max homeobox-leucine zipper protein REVOLUTA-like (LOC100813804), mRNA homeobox-leucine zipper protein REVOLUTA-like(LOC100813804) coding protein psRNATarget

Reference

1 PMID:22559273
"Genome organization and characteristics of soybean microRNAs";
Turner M, Yu O, Subramanian S;
BMC Genomics. 13:169(2012).
© 2017 OPP-ncRBASE. All rights reserved.