Search result

BaseInfo

ncRNA ID	ath-miR162b-3p
Species	Arabidopsis thaliana
Class	miRNA
Genome position	chr5:7740598-7740708 [-]
Reference genome	TAIR10
Source	miRBase
Length	21
Mature sequence(if miRNA)	13 - UCGAUAAACCUCUGCAUCCAG - 33
Stem-loop(if miRNA)	G    --       G    C    C       A    ------C        UUU GAGU AAGU  CGCUGGA GCAG GGUU AUCGAUC AUUC       UGUGAAUA   A |||| ||||  ||||||| |||| |||| ||||||| ||||       |||||||| CUCG UUCG  GCGACCU CGUC CCAA UAGCUAG UAAG       ACAUUUGU   U     -    UC       A    U    A       C    AACGAAA        UUU
Stem-loop sequence	GAGUGAAGUCGCUGGAGGCAGCGGUUCAUCGAUCAAUUCCUGUGAAUAUUUAUUUUUGUUUACAAAAGCAAGAAUCGAUCGAUAAACCUCUGCAUCCAGCGCUGCUUGCUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AF187317.1	ncRNA:21   GACCUACGUCUCCA-AAUAGCU   1   ||||||||||||||-||||||| targets:3058   CUGGAUGCAGAGGUAUUAUCGA   3079 Target Full Sequence	3.0	Arabidopsis thaliana CAF protein (CAF) mRNA, complete cds	NA	coding protein	psRNATarget
AF292940.1	ncRNA:21   GACCUACGUCUCCA-AAUAGCU   1   ||||||||||||||-||||||| targets:3422   CUGGAUGCAGAGGUAUUAUCGA   3443 Target Full Sequence	3.0	Arabidopsis thaliana short integuments 1 (SIN1) mRNA, complete cds	NA	coding protein	psRNATarget
NM_099986.4	ncRNA:21   GACCUACGUCUCCA-AAUAGCU   1   ||||||||||||||-||||||| targets:3447   CUGGAUGCAGAGGUAUUAUCGA   3468 Target Full Sequence	3.0	Arabidopsis thaliana dicer-like 1 (DCL1), mRNA	dicer-like 1(DCL1)	coding protein	psRNATarget

Reference

1	PMID:12101121 "MicroRNAs in plants"; Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP; Genes Dev. 16:1616-1626(2002).
2	PMID:12202040 "Prediction of plant microRNA targets"; Rhoades MW, Reinhart BJ, Lim LP, Burge CB, Bartel B, Bartel DP; Cell. 110:513-520(2002).
3	PMID:16040653 "Expression of Arabidopsis MIRNA genes"; Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC; Plant Physiol. 138:2145-2154(2005).
4	PMID:16954541 "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant"; Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC; Genome Res. 16:1276-1288(2006).
5	PMID:17182867 "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"; Rajagopalan R, Vaucheret H, Trejo J, Bartel DP; Genes Dev. 20:3407-3425(2006).