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BaseInfo

ncRNA ID	gma-miR4416b
Species	Glycine max
Class	miRNA
Genome position	chr3:38094628-38094771 [-]
Reference genome	v1.0
Source	miRBase
Length	21
Mature sequence(if miRNA)	114 - UGGGUGAGAGAAACGCGUAUC - 134
Stem-loop(if miRNA)	AU     A            AA  G         G   UUCA    - UACUAGUUCACACAGUUGCAUCCAC   CUUUG UCUGGGUGAGAG  AC CGUAUCGAU AGA    GGGC U                         A   ||||| ||||||||||||  || ||||||||| |||    |||| |                         C   GAGAU AGAUCCACUCUC  UG GCAUAGCUA UUU    GUGU A                         A UU     C            -C  G         G   ---U    G GUGAGGUUUAACAAUUUUGUUAACC
Stem-loop sequence	AUCUUUGAUCUGGGUGAGAGAAACGCGUAUCGAUGAGAUUCAGGGCUUACUAGUUCACACAGUUGCAUCCACACACCAAUUGUUUUAACAAUUUGGAGUGAGUGUGUUUUGAUCGAUACGGGUCCUCUCACCUAGACUAGAGUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_014776670.1	ncRNA:21   CUAUGCGCAAAGAGAGUGGGU   1   **|=||*|||||||||||||| targets:399   UCUGCGAGUUUCUCUCACCCA   419 Target Full Sequence	2.0	PREDICTED: Glycine max AUGMIN subunit 8-like (LOC100802440), transcript variant X8, mRNA	AUGMIN subunit 8-like(LOC100802440)	coding protein	psRNATarget
XM_014776673.1	ncRNA:21   CUAUGCGCAAAGAGAGUGGGU   1   **|=||*|||||||||||||| targets:399   UCUGCGAGUUUCUCUCACCCA   419 Target Full Sequence	2.0	PREDICTED: Glycine max AUGMIN subunit 8-like (LOC100802440), transcript variant X10, mRNA	AUGMIN subunit 8-like(LOC100802440)	coding protein	psRNATarget
XM_003525899.3	ncRNA:21   CUAUGCGCAAAGAGAGUGGGU   1   **|=||*|||||||||||||| targets:398   UCUGCGAGUUUCUCUCACCCA   418 Target Full Sequence	2.0	PREDICTED: Glycine max AUGMIN subunit 8-like (LOC100802440), transcript variant X2, mRNA	AUGMIN subunit 8-like(LOC100802440)	coding protein	psRNATarget
XM_006582048.2	ncRNA:21   CUAUGCGCAAAGAGAGUGGGU   1   **|=||*|||||||||||||| targets:398   UCUGCGAGUUUCUCUCACCCA   418 Target Full Sequence	2.0	PREDICTED: Glycine max AUGMIN subunit 8-like (LOC100802440), transcript variant X5, mRNA	AUGMIN subunit 8-like(LOC100802440)	coding protein	psRNATarget
XM_006582050.2	ncRNA:21   CUAUGCGCAAAGAGAGUGGGU   1   **|=||*|||||||||||||| targets:405   UCUGCGAGUUUCUCUCACCCA   425 Target Full Sequence	2.0	PREDICTED: Glycine max AUGMIN subunit 8-like (LOC100802440), transcript variant X12, mRNA	AUGMIN subunit 8-like(LOC100802440)	coding protein	psRNATarget
XM_014776669.1	ncRNA:21   CUAUGCGCAAAGAGAGUGGGU   1   **|=||*|||||||||||||| targets:399   UCUGCGAGUUUCUCUCACCCA   419 Target Full Sequence	2.0	PREDICTED: Glycine max AUGMIN subunit 8-like (LOC100802440), transcript variant X7, mRNA	AUGMIN subunit 8-like(LOC100802440)	coding protein	psRNATarget
XM_006582045.2	ncRNA:21   CUAUGCGCAAAGAGAGUGGGU   1   **|=||*|||||||||||||| targets:398   UCUGCGAGUUUCUCUCACCCA   418 Target Full Sequence	2.0	PREDICTED: Glycine max AUGMIN subunit 8-like (LOC100802440), transcript variant X1, mRNA	AUGMIN subunit 8-like(LOC100802440)	coding protein	psRNATarget
XM_006582046.2	ncRNA:21   CUAUGCGCAAAGAGAGUGGGU   1   **|=||*|||||||||||||| targets:398   UCUGCGAGUUUCUCUCACCCA   418 Target Full Sequence	2.0	PREDICTED: Glycine max AUGMIN subunit 8-like (LOC100802440), transcript variant X3, mRNA	AUGMIN subunit 8-like(LOC100802440)	coding protein	psRNATarget
XM_003523984.3	ncRNA:21   CUAUGCGCAAAGAGAGUGGGU   1   ***=||*|||||||||||||| targets:1018   UCAGCGAGUUUCUCUCACCCA   1038 Target Full Sequence	3.0	PREDICTED: Glycine max AUGMIN subunit 8 (LOC100796917), transcript variant X1, mRNA	AUGMIN subunit 8(LOC100796917)	coding protein	psRNATarget
XM_014774693.1	ncRNA:21   CUAUGCGCAAAGAGAGUGGGU   1   ***=||*|||||||||||||| targets:1018   UCAGCGAGUUUCUCUCACCCA   1038 Target Full Sequence	3.0	PREDICTED: Glycine max AUGMIN subunit 8 (LOC100796917), transcript variant X5, mRNA	AUGMIN subunit 8(LOC100796917)	coding protein	psRNATarget

Reference

1

PMID:22156213 "MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs"; Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC; Genes Dev. 25:2540-2553(2011).