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BaseInfo

ncRNA ID	gma-miR1520i
Species	Glycine max
Class	miRNA
Genome position	chr3:36973794-36973937 [-]
Reference genome	v1.0
Source	miRBase
Length	24
Mature sequence(if miRNA)	3 - AACGUGACACGUGACGGUCAACAU - 26
Stem-loop(if miRNA)	UA        UA              CUUAUU   U  ---    UGUCACGUGUCAUGUUCUGAUUGGUCAAUG   AUGUUGAC  UCACGUGUCACGUU      GGA UA   UGAC                              A   ||||||||  ||||||||||||||      ||| ||   ||||   UACAACUG  AGUGCACAGUGCAA      CUA AC   CAGU                              A AC        GC              ----AA   -  UUA    UGAGGUAUUUUCUAAUUUACAUAACAAUAA
Stem-loop sequence	UAAUGUUGACUAUCACGUGUCACGUUCUUAUUGGAUUAUGACUGUCACGUGUCAUGUUCUGAUUGGUCAAUGAAAAUAACAAUACAUUUAAUCUUUUAUGGAGUUGACAUUCAAUCAAAACGUGACACGUGACGGUCAACAUCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_006602607.2	ncRNA:24   UACAACUGGCAGUGCACAGUGCAA   1   ||||||||=||||||||||||||| targets:528   AUGUUGACUGUCACGUGUCACGUU   551 Target Full Sequence	1.0	PREDICTED: Glycine max transcription factor TGA7-like (LOC100794752), mRNA	transcription factor TGA7-like(LOC100794752)	coding protein	psRNATarget
XM_003518407.3	ncRNA:24   UACAACUGGCAGUGCACAGUGCAA   1   ||*|||||=||||||||||||||| targets:1629   AUUUUGACUGUCACGUGUCACGUU   1652 Target Full Sequence	1.0	PREDICTED: Glycine max UPF0481 protein At3g47200-like (LOC100803577), mRNA	UPF0481 protein At3g47200-like(LOC100803577)	coding protein	psRNATarget
XM_014777738.1	ncRNA:24   UACAACUGGCAGUGCACAGUGCAA   1   ||*|||||*||||||||||||||| targets:2146   AUCUUGACGGUCACGUGUCACGUU   2169 Target Full Sequence	1.0	PREDICTED: Glycine max laccase-6-like (LOC100789406), transcript variant X1, mRNA	laccase-6-like(LOC100789406)	coding protein	psRNATarget
XM_003529834.3	ncRNA:24   UACAACUGGCAGUGCACAGUGCAA   1   ||*|||||*||||||||||||||| targets:2001   AUCUUGACGGUCACGUGUCACGUU   2024 Target Full Sequence	1.0	PREDICTED: Glycine max laccase-6-like (LOC100789406), transcript variant X2, mRNA	laccase-6-like(LOC100789406)	coding protein	psRNATarget
XM_014762964.1	ncRNA:24   UACAACUGGCAGUGCACAGUGCAA   1   |||||||==||||||||||||||| targets:163   AUGUUGAUUGUCACGUGUCACGUU   186 Target Full Sequence	2.0	PREDICTED: Glycine max fasciclin-like arabinogalactan protein 1 (LOC106794953), mRNA	fasciclin-like arabinogalactan protein 1(LOC106794953)	coding protein	psRNATarget
HI410445.1	ncRNA:24   UACAACUGGCAGUGCACAGUGCAA   1   |||*||||=|||||||||||=||| targets:71   AUGAUGACUGUCACGUGUCAUGUU   94 Target Full Sequence	2.5	Sequence 8570 from Patent EP2074227	NA	coding protein	psRNATarget
JB170906.1	ncRNA:24   UACAACUGGCAGUGCACAGUGCAA   1   |||*||||=|||||||||||=||| targets:71   AUGAUGACUGUCACGUGUCAUGUU   94 Target Full Sequence	2.5	Sequence 8570 from Patent EP2559767	NA	coding protein	psRNATarget
LQ242575.1	ncRNA:24   UACAACUGGCAGUGCACAGUGCAA   1   |||*||||=|||||||||||=||| targets:71   AUGAUGACUGUCACGUGUCAUGUU   94 Target Full Sequence	2.5	Sequence 8570 from Patent EP2985353	NA	coding protein	psRNATarget
JB170905.1	ncRNA:24   UACAACUGGCAGUGCACAGUGCAA   1   |||*||||=|||||||||||=||| targets:10   AUGAUGACUGUCACGUGUCAUGUU   33 Target Full Sequence	2.5	Sequence 8569 from Patent EP2559767	NA	coding protein	psRNATarget
HI410444.1	ncRNA:24   UACAACUGGCAGUGCACAGUGCAA   1   |||*||||=|||||||||||=||| targets:10   AUGAUGACUGUCACGUGUCAUGUU   33 Target Full Sequence	2.5	Sequence 8569 from Patent EP2074227	NA	coding protein	psRNATarget
LQ242574.1	ncRNA:24   UACAACUGGCAGUGCACAGUGCAA   1   |||*||||=|||||||||||=||| targets:10   AUGAUGACUGUCACGUGUCAUGUU   33 Target Full Sequence	2.5	Sequence 8569 from Patent EP2985353	NA	coding protein	psRNATarget

Reference

1	PMID:20122185 "Prediction of novel miRNAs and associated target genes in Glycine max"; Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G; BMC Bioinformatics. 11 Suppl 1:S14(2010).