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BaseInfo

ncRNA ID ath-miR3434-3p
Species Arabidopsis thaliana
Class miRNA
Genome position chr5:7583055-7583403 [-]
Reference genome TAIR10
Source miRBase
Length 20
Mature sequence(if miRNA) 78 - UCAGAGUAUCAGCCAUGUGA - 97
Stem-loop(if miRNA)         -UAUAUU   G      C           U       U      CAG       G    G  A           U        U  AUU                  UAAAG       AUU   -CU  CUCUCAAGUAACUUAGGUUUGAAAAAGCAGCUUCUCCAG
AAAUUCCU       GCA AUAACA CUUAAGGAAGG UUGUUUU GUUUUA   GUUAACU UGGU GU AAUUUUAUCAC UGGCUGAU CU   AUUUUGAGCAAGGCUUCC     UCAGAUC   GGU   CU                                       U
||||||||       ||| |||||| ||||||||||| ||||||| ||||||   ||||||| |||| || ||||||||||| |||||||| ||   ||||||||||||||||||     |||||||   |||   ||                                       C
UUUAAGGG       CGU UGUUGU GAAUUCCUUCC AACAAAA CAAAAU   CAAUUGA ACCA CA UUAAAAUAGUG ACCGACUA GA   UAAAACUUGUUCCGAAGG     UUCGUUG   GAG   AG                                       A
        UUUAAUU   -      U           U       U      AUA       G    A  A           U        U  GAC                  ----C       -CU   CAA  AUAAACACCUAAACGACUCAUCACUCUUCCCAUUCUACG
Stem-loop sequence AAAUUCCUUAUAUUGCAGAUAACACCUUAAGGAAGGUUUGUUUUUGUUUUACAGGUUAACUGUGGUGGUAAAUUUUAUCACUUGGCUGAUUCUAUUAUUUUGAGCAAGGCUUCCUAAAGUCAGAUCAUUGGUCUCUCUCUCAAGUAACUUAGGUUUGAAAAAGCAGCUUCUCCAGUCAGCAUCUUACCCUUCUCACUACUCAGCAAAUCCACAAAUAGAAACGAGUCGUUGCUUCGGAAGCCUUGUUCAAAAUCAGAGUAUCAGCCAUGUGAUAAAAUUAACAACCAGAGUUAACAUAUAAAACUAAAACAAUCCUUCCUUAAGUUGUUGUUGCUUAAUUUGGGAAUUU

Reference

1 PMID:20407027
"MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana";
Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC;
Plant Cell. 22:1074-1089(2010).