ncRNA ID | ath-miR3434-5p |
Species | Arabidopsis thaliana |
Class | miRNA |
Genome position | chr5:7583055-7583403 [-] |
Reference genome | TAIR10 |
Source | miRBase |
Length | 20 |
Mature sequence(if miRNA) | 251 - ACUUGGCUGAUUCUAUUAUU - 270 |
Stem-loop(if miRNA) |
        -UAUAUU   G      C           U       U      CAG       G    G  A           U        U  AUU                  UAAAG       AUU   -CU  CUCUCAAGUAACUUAGGUUUGAAAAAGCAGCUUCUCCAG AAAUUCCU       GCA AUAACA CUUAAGGAAGG UUGUUUU GUUUUA   GUUAACU UGGU GU AAUUUUAUCAC UGGCUGAU CU   AUUUUGAGCAAGGCUUCC     UCAGAUC   GGU   CU                                       U ||||||||       ||| |||||| ||||||||||| ||||||| ||||||   ||||||| |||| || ||||||||||| |||||||| ||   ||||||||||||||||||     |||||||   |||   ||                                       C UUUAAGGG       CGU UGUUGU GAAUUCCUUCC AACAAAA CAAAAU   CAAUUGA ACCA CA UUAAAAUAGUG ACCGACUA GA   UAAAACUUGUUCCGAAGG     UUCGUUG   GAG   AG                                       A         UUUAAUU   -      U           U       U      AUA       G    A  A           U        U  GAC                  ----C       -CU   CAA  AUAAACACCUAAACGACUCAUCACUCUUCCCAUUCUACG |
Stem-loop sequence | AAAUUCCUUAUAUUGCAGAUAACACCUUAAGGAAGGUUUGUUUUUGUUUUACAGGUUAACUGUGGUGGUAAAUUUUAUCACUUGGCUGAUUCUAUUAUUUUGAGCAAGGCUUCCUAAAGUCAGAUCAUUGGUCUCUCUCUCAAGUAACUUAGGUUUGAAAAAGCAGCUUCUCCAGUCAGCAUCUUACCCUUCUCACUACUCAGCAAAUCCACAAAUAGAAACGAGUCGUUGCUUCGGAAGCCUUGUUCAAAAUCAGAGUAUCAGCCAUGUGAUAAAAUUAACAACCAGAGUUAACAUAUAAAACUAAAACAAUCCUUCCUUAAGUUGUUGUUGCUUAAUUUGGGAAUUU |
1 | PMID:20407027
"MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana"; Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC; Plant Cell. 22:1074-1089(2010). |