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BaseInfo

ncRNA ID	gma-miR4407
Species	Glycine max
Class	miRNA
Genome position	chr20:46020235-46020365 [+]
Reference genome	v1.0
Source	miRBase
Length	22
Mature sequence(if miRNA)	95 - CAGAGGAAGCAGCACUUGUACC - 116
Stem-loop(if miRNA)	UCUG          -            G   A   AAU      ----U  CUUC      UU AAGUUG    GGUUGAGGUA AAGUGUUGCUUC UCU AGU   UAAUGU     GC    AUUCAA  C ||||||    |||||||||| |||||||||||| ||| |||   ||||||     ||    |||||| UUCAAU    UCAACUCCAU UUCACGACGAAG AGA UCA   AUUACG     CG    UGAGUU  A       -UAA          G            G   C   --C      UGCAU  -CAU      UA
Stem-loop sequence	AAGUUGUCUGGGUUGAGGUAAAGUGUUGCUUCGUCUAAGUAAUUAAUGUUGCCUUCAUUCAAUUCAAUUUGAGUUACGCUACGUGCAUUACACUCAGAGGAAGCAGCACUUGUACCUCAACUAAUUAACUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_003550461.3	ncRNA:22   CCAUGUUCACGACGAAGGAGAC   1   |*|||=|||||||||||||||| targets:777   GCUACGAGUGCUGCUUCCUCUG   798 Target Full Sequence	1.0	PREDICTED: Glycine max adenylate isopentenyltransferase 5, chloroplastic (LOC100778430), mRNA	adenylate isopentenyltransferase 5, chloroplastic(LOC100778430)	coding protein	psRNATarget
XM_003528622.3	ncRNA:22   CCAUGUUCACGACGAAGGAGAC   1   |*|||=|*|||||||||||||| targets:888   GCUACGACUGCUGCUUCCUCUG   909 Target Full Sequence	2.0	PREDICTED: Glycine max adenylate isopentenyltransferase 5, chloroplastic-like (LOC100782474), mRNA	adenylate isopentenyltransferase 5, chloroplastic-like(LOC100782474)	coding protein	psRNATarget
XM_003536632.3	ncRNA:22   CCAUGUUCACGACGAAGGAGAC   1   ||||||=|||=||||||||||| targets:943   GGUACAGGUGUUGCUUCCUCUG   964 Target Full Sequence	2.5	PREDICTED: Glycine max adenylate isopentenyltransferase (LOC100813761), mRNA	adenylate isopentenyltransferase(LOC100813761)	coding protein	psRNATarget
NM_001250430.3	ncRNA:22   CCAUGUUCACGACGAAGGAGAC   1   |||||*|||||||=|||||||| targets:521   GGUACCAGUGCUGUUUCCUCUG   542 Target Full Sequence	2.5	Glycine max isopentenyl transferase (IPT), mRNA	isopentenyl transferase(IPT)	coding protein	psRNATarget
AY550884.1	ncRNA:22   CCAUGUUCACGACGAAGGAGAC   1   |||||*|||||||=|||||||| targets:526   GGUACCAGUGCUGUUUCCUCUG   547 Target Full Sequence	2.5	Glycine max isopentenyl transferase (Ipt) mRNA, complete cds	NA	coding protein	psRNATarget
XM_014770324.1	ncRNA:22   CCAUGUUCACGACGAAGGAGAC   1   |*||=|||*||||||||||||* targets:596   GCUAUAAGGGCUGCUUCCUCUU   617 Target Full Sequence	3.0	PREDICTED: Glycine max uncharacterized LOC100802012 (LOC100802012), transcript variant X1, mRNA	uncharacterized LOC100802012(LOC100802012)	coding protein	psRNATarget

Reference

1	PMID:20122185 "Prediction of novel miRNAs and associated target genes in Glycine max"; Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G; BMC Bioinformatics. 11 Suppl 1:S14(2010).