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BaseInfo

ncRNA ID	gma-miR1520b
Species	Glycine max
Class	miRNA
Genome position	chr20:40641640-40641768 [-]
Reference genome	v1.0
Source	miRBase
Length	23
Mature sequence(if miRNA)	11 - GUGACAGUCAUCAUUUAAUAAGA - 33
Stem-loop(if miRNA)	C                           A                  -------    -CCAA  AC  GUGUCACGUUCUUAUUGAAUGAUGACU UUACGUGUCAUGUUCUGA       UCGA     UG  A  ||||||||||||||||||||||||||| ||||||||||||||||||       ||||     ||  A  UACAGUGCAAGAAUAAUUUACUACUGA AGUGCACAGUACAAGACU       AGCU     AC  C A                           C                  AACCUAC    UAAUA  AA
Stem-loop sequence	CGUGUCACGUUCUUAUUGAAUGAUGACUAUUACGUGUCAUGUUCUGAUCGACCAAUGACAACAACAAUAAUUCGACAUCCAAUCAGAACAUGACACGUGACAGUCAUCAUUUAAUAAGAACGUGACAUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ242574.1	ncRNA:23   AGAAUAAUUUACUACUGACAGUG   1   |||||||==|||||||||||||| targets:1   UCUUAUUGGAUGAUGACUGUCAC   23 Target Full Sequence	2.0	Sequence 8569 from Patent EP2985353	NA	coding protein	psRNATarget
HI410444.1	ncRNA:23   AGAAUAAUUUACUACUGACAGUG   1   |||||||==|||||||||||||| targets:1   UCUUAUUGGAUGAUGACUGUCAC   23 Target Full Sequence	2.0	Sequence 8569 from Patent EP2074227	NA	coding protein	psRNATarget
JB170905.1	ncRNA:23   AGAAUAAUUUACUACUGACAGUG   1   |||||||==|||||||||||||| targets:1   UCUUAUUGGAUGAUGACUGUCAC   23 Target Full Sequence	2.0	Sequence 8569 from Patent EP2559767	NA	coding protein	psRNATarget
HI410445.1	ncRNA:23   AGAAUAAUUUACUACUGACAGUG   1   |||||||==|||||||||||||| targets:62   UCUUAUUGGAUGAUGACUGUCAC   84 Target Full Sequence	2.0	Sequence 8570 from Patent EP2074227	NA	coding protein	psRNATarget
JB170906.1	ncRNA:23   AGAAUAAUUUACUACUGACAGUG   1   |||||||==|||||||||||||| targets:62   UCUUAUUGGAUGAUGACUGUCAC   84 Target Full Sequence	2.0	Sequence 8570 from Patent EP2559767	NA	coding protein	psRNATarget
LQ242575.1	ncRNA:23   AGAAUAAUUUACUACUGACAGUG   1   |||||||==|||||||||||||| targets:62   UCUUAUUGGAUGAUGACUGUCAC   84 Target Full Sequence	2.0	Sequence 8570 from Patent EP2985353	NA	coding protein	psRNATarget
HI410475.1	ncRNA:23   AGAAUAAUUUACUACUGACAGUG   1   |=|||||=||||||||||*|||| targets:91   UUUUAUUGAAUGAUGACUUUCAC   113 Target Full Sequence	2.5	Sequence 8600 from Patent EP2074227	NA	coding protein	psRNATarget
LQ242605.1	ncRNA:23   AGAAUAAUUUACUACUGACAGUG   1   |=|||||=||||||||||*|||| targets:91   UUUUAUUGAAUGAUGACUUUCAC   113 Target Full Sequence	2.5	Sequence 8600 from Patent EP2985353	NA	coding protein	psRNATarget
JB170936.1	ncRNA:23   AGAAUAAUUUACUACUGACAGUG   1   |=|||||=||||||||||*|||| targets:91   UUUUAUUGAAUGAUGACUUUCAC   113 Target Full Sequence	2.5	Sequence 8600 from Patent EP2559767	NA	coding protein	psRNATarget
XM_006573624.2	ncRNA:23   AGAAUAAUUUACUACUGACAGUG   1   |=|||||=||||||||||*|||| targets:1500   UUUUAUUGAAUGAUGACUUUCAC   1522 Target Full Sequence	2.5	PREDICTED: Glycine max transcription factor bHLH18-like (LOC100816551), transcript variant X2, mRNA	transcription factor bHLH18-like(LOC100816551)	coding protein	psRNATarget
XM_006573623.2	ncRNA:23   AGAAUAAUUUACUACUGACAGUG   1   |=|||||=||||||||||*|||| targets:1512   UUUUAUUGAAUGAUGACUUUCAC   1534 Target Full Sequence	2.5	PREDICTED: Glycine max transcription factor bHLH18-like (LOC100816551), transcript variant X1, mRNA	transcription factor bHLH18-like(LOC100816551)	coding protein	psRNATarget
AK245140.1	ncRNA:23   AGAAUAAUUUACUACUGACAGUG   1   |=|||||=|||*||||||||||| targets:1493   UUUUAUUGAAUCAUGACUGUCAC   1515 Target Full Sequence	2.5	Glycine max cDNA, clone: GMFL01-21-P01	NA	coding protein	psRNATarget

Reference

1	PMID:18402695 "Novel and nodulation-regulated microRNAs in soybean roots"; Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O; BMC Genomics. 9:160(2008).