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BaseInfo

ncRNA ID	gma-miR2606a
Species	Glycine max
Class	miRNA
Genome position	chr20:32872633-32872816 [+]
Reference genome	v1.0
Source	miRBase
Length	21
Mature sequence(if miRNA)	154 - AAAAGCACUUAAGGAACGGUA - 174
Stem-loop(if miRNA)	A       U    A           U           C       UCA        C A       C    A    CUC   AUAAA     GC  AAGCUUA AUAC GUUCCUUAGGU CUUUUGGUGCU UUCUUCA   AUUAGAAU G AGUUUCA CUUG UAAU   UUA     GGUUU  A  ||||||| |||| ||||||||||| ||||||||||| |||||||   |||||||| | ||||||| |||| ||||   |||     |||||  U  UUUGAAU UAUG CAAGGAAUUCA GAAAACCACGA AAGAAGU   UAGUUUUA C UUAAAGU GAGC AUUA   AAU     CUAGA  U C       C    G           C           U       ---        A C       U    C    ---   -ACAA     AA
Stem-loop sequence	AAAGCUUAUAUACAGUUCCUUAGGUUCUUUUGGUGCUCUUCUUCAUCAAUUAGAAUCGAAGUUUCACCUUGAUAAUCUCUUAAUAAAGGUUUGCAUUAAAGAUCAACAUAAAUUACCGAGUUGAAAUUCCAAUUUUGAUUGAAGAAUAGCACCAAAAGCACUUAAGGAACGGUAUCUAAGUUUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001249514.2	ncRNA:21   AUGGCAAGGAAUUCACGAAAA   1   |*=|*|||||||||||||||| targets:739   UUUCAUUCCUUAAGUGCUUUU   759 Target Full Sequence	2.0	Glycine max uncharacterized LOC547690 (LOC547690), mRNA	uncharacterized LOC547690(LOC547690)	coding protein	psRNATarget
XM_006581415.2	ncRNA:21   AUGGCAAGGAAUUCACGAAAA   1   |*=|*|||||||||||||||| targets:796   UUUCAUUCCUUAAGUGCUUUU   816 Target Full Sequence	2.0	PREDICTED: Glycine max uncharacterized LOC547690 (LOC547690), mRNA	uncharacterized LOC547690(LOC547690)	coding protein	psRNATarget
XM_014768543.1	ncRNA:21   AUGGCAAGGAAUUCACGAAAA   1   |=|*||||||||||||=|||| targets:2099   UGCAGUUCCUUAAGUGUUUUU   2119 Target Full Sequence	2.5	PREDICTED: Glycine max protein DETOXIFICATION 49-like (LOC100787316), mRNA	protein DETOXIFICATION 49-like(LOC100787316)	coding protein	psRNATarget
XM_006587296.2	ncRNA:21   AUGGCAAGGAAUUCACGAAAA   1   |=|*||||||||*|||||||| targets:2033   UGCAGUUCCUUACGUGCUUUU   2053 Target Full Sequence	2.5	PREDICTED: Glycine max protein DETOXIFICATION 49-like (LOC100788027), mRNA	protein DETOXIFICATION 49-like(LOC100788027)	coding protein	psRNATarget

Reference

1

PMID:22156213 "MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs"; Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC; Genes Dev. 25:2540-2553(2011).