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BaseInfo

ncRNA ID	gma-miR4385
Species	Glycine max
Class	miRNA
Genome position	chr20:23982591-23982686 [-]
Reference genome	v1.0
Source	miRBase
Length	24
Mature sequence(if miRNA)	63 - AAUCGAUGUAGAAAAGUGAUUGGU - 86
Stem-loop(if miRNA)	U     A  U   C                 GGUG         AUA  UGUAA UA AAU GAUGUAGAAAAGUGAUU    ACAUUGAUU   A  ||||| || ||| |||||||||||||||||    |||||||||  AUAUU AU UUA CUACAUCUUUUUAUUAA    UGUAACUAA   C A     A  U   A                 AAGA         GAC
Stem-loop sequence	UUGUAAAUAUAAUCGAUGUAGAAAAGUGAUUGGUGACAUUGAUUAUAACCAGAAUCAAUGUAGAAAAUUAUUUUUCUACAUCAAUUUUAAUUAUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_006588741.2	ncRNA:24   UGGUUAGUGAAAAGAUGUAGCUAA   1   |*||||||||*||||||||||||| targets:2867   AACAAUCACUAUUCUACAUCGAUU   2890 Target Full Sequence	1.0	PREDICTED: Glycine max phosphoinositide phosphatase SAC1-like (LOC102670366), transcript variant X2, mRNA	phosphoinositide phosphatase SAC1-like(LOC102670366)	coding protein	psRNATarget
XM_014763017.1	ncRNA:24   UGGUUAGUGAAAAGAUGUAGCUAA   1   |*||||||||*||||||||||||| targets:2963   AACAAUCACUAUUCUACAUCGAUU   2986 Target Full Sequence	1.0	PREDICTED: Glycine max phosphoinositide phosphatase SAC1-like (LOC102660101), transcript variant X1, mRNA	phosphoinositide phosphatase SAC1-like(LOC102660101)	coding protein	psRNATarget
XM_014770026.1	ncRNA:24   UGGUUAGUGAAAAGAUGUAGCUAA   1   =**||||=*||||||||||||||| targets:532   GGAAAUCGAUUUUCUACAUCGAUU   555 Target Full Sequence	2.0	PREDICTED: Glycine max endo-1,4-beta-xylanase A-like (LOC100818319), transcript variant X7, mRNA	endo-1,4-beta-xylanase A-like(LOC100818319)	coding protein	psRNATarget
XM_003549318.3	ncRNA:24   UGGUUAGUGAAAAGAUGUAGCUAA   1   =**||||=*||||||||||||||| targets:532   GGAAAUCGAUUUUCUACAUCGAUU   555 Target Full Sequence	2.0	PREDICTED: Glycine max endo-1,4-beta-xylanase A-like (LOC100818319), transcript variant X4, mRNA	endo-1,4-beta-xylanase A-like(LOC100818319)	coding protein	psRNATarget
XM_006601191.2	ncRNA:24   UGGUUAGUGAAAAGAUGUAGCUAA   1   =**||||=*||||||||||||||| targets:532   GGAAAUCGAUUUUCUACAUCGAUU   555 Target Full Sequence	2.0	PREDICTED: Glycine max endo-1,4-beta-xylanase A-like (LOC100818319), transcript variant X5, mRNA	endo-1,4-beta-xylanase A-like(LOC100818319)	coding protein	psRNATarget
XM_014770024.1	ncRNA:24   UGGUUAGUGAAAAGAUGUAGCUAA   1   =**||||=*||||||||||||||| targets:533   GGAAAUCGAUUUUCUACAUCGAUU   556 Target Full Sequence	2.0	PREDICTED: Glycine max endo-1,4-beta-xylanase A-like (LOC100818319), transcript variant X3, mRNA	endo-1,4-beta-xylanase A-like(LOC100818319)	coding protein	psRNATarget
XM_006601190.2	ncRNA:24   UGGUUAGUGAAAAGAUGUAGCUAA   1   =**||||=*||||||||||||||| targets:533   GGAAAUCGAUUUUCUACAUCGAUU   556 Target Full Sequence	2.0	PREDICTED: Glycine max endo-1,4-beta-xylanase A-like (LOC100818319), transcript variant X2, mRNA	endo-1,4-beta-xylanase A-like(LOC100818319)	coding protein	psRNATarget
XM_014770025.1	ncRNA:24   UGGUUAGUGAAAAGAUGUAGCUAA   1   =**||||=*||||||||||||||| targets:532   GGAAAUCGAUUUUCUACAUCGAUU   555 Target Full Sequence	2.0	PREDICTED: Glycine max endo-1,4-beta-xylanase A-like (LOC100818319), transcript variant X6, mRNA	endo-1,4-beta-xylanase A-like(LOC100818319)	coding protein	psRNATarget
XM_006601189.2	ncRNA:24   UGGUUAGUGAAAAGAUGUAGCUAA   1   =**||||=*||||||||||||||| targets:532   GGAAAUCGAUUUUCUACAUCGAUU   555 Target Full Sequence	2.0	PREDICTED: Glycine max endo-1,4-beta-xylanase A-like (LOC100818319), transcript variant X1, mRNA	endo-1,4-beta-xylanase A-like(LOC100818319)	coding protein	psRNATarget

Reference

1	PMID:20122185 "Prediction of novel miRNAs and associated target genes in Glycine max"; Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G; BMC Bioinformatics. 11 Suppl 1:S14(2010).