ncRNA ID | gma-miR4400 |
Species | Glycine max |
Class | miRNA |
Genome position | chr20:1764848-1765004 [+] |
Reference genome | v1.0 |
Source | miRBase |
Length | 24 |
Mature sequence(if miRNA) | 15 - UUCGGAAAAAUUCUGGAAGACGUC - 38 |
Stem-loop(if miRNA) |
                              A G     ACUCCGAAAAACUCCUAGAAGA     CUUCCGGAAGAAGAAGGUGGG CGGAAGACUCUUCUUUCGGAAAAAUUCUGG A ACGUC                      ACCUU                     C |||||||||||||||||||||||||||||| | |||||                      |||||                     C GUCUUCUGGGAAGAAAGCUUUUUUAAGGCC U UGCAG                      GUCUU                     U                               C G     ------------------GAAC     GCAUAAGACCUCAAGAAGCCC |
Stem-loop sequence | CGGAAGACUCUUCUUUCGGAAAAAUUCUGGAAGACGUCACUCCGAAAAACUCCUAGAAGAACCUUCUUCCGGAAGAAGAAGGUGGGCCUCCCGAAGAACUCCAGAAUACGUUCUGCAAGGACGUGUCCCGGAAUUUUUUCGAAAGAAGGGUCUUCUG |
1 | PMID:20122185
"Prediction of novel miRNAs and associated target genes in Glycine max"; Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G; BMC Bioinformatics. 11 Suppl 1:S14(2010). |