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BaseInfo

ncRNA ID	gma-miR5380c
Species	Glycine max
Class	miRNA
Genome position	chr2:48423720-48423812 [-]
Reference genome	v1.0
Source	miRBase
Length	21
Mature sequence(if miRNA)	6 - AUGAAUGGUGAAGAUGAAGAG - 26
Stem-loop(if miRNA)	G   U      G                  A       C      U  AGU ACUCUU AUCUUCACUAUUCAUUUU UUGAAAU UAAUGA U  ||| |||||| |||||||||||||||||| ||||||| ||||||  UCA UGAGAA UAGAAGUGGUAAGUAAAA AACUUUA AUUACU A -   U      G                  G       U      A
Stem-loop sequence	GAGUUACUCUUGAUCUUCACUAUUCAUUUUAUUGAAAUCUAAUGAUUAAUCAUUAUAUUUCAAGAAAAUGAAUGGUGAAGAUGAAGAGUUACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_003540354.3	ncRNA:21   GAGAAGUAGAAGUGGUAAGUA   1   ||||*||||||||=||||||| targets:129   CUCUACAUCUUCAUCAUUCAU   149 Target Full Sequence	2.5	PREDICTED: Glycine max protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like (LOC100802937), transcript variant X1, mRNA	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like(LOC100802937)	coding protein	psRNATarget
XM_014773035.1	ncRNA:21   GAGAAGUAGAAGUGGUAAGUA   1   *|||||||||||||||*|||* targets:324   AUCUUCAUCUUCACCAAUCAA   344 Target Full Sequence	2.5	PREDICTED: Glycine max RNA-binding protein 2-like (LOC100812551), transcript variant X3, mRNA	RNA-binding protein 2-like(LOC100812551)	coding protein	psRNATarget
XM_006606097.2	ncRNA:21   GAGAAGUAGAAGUGGUAAGUA   1   *|||||||||||||||*|||* targets:319   AUCUUCAUCUUCACCAAUCAA   339 Target Full Sequence	2.5	PREDICTED: Glycine max RNA-binding protein 2-like (LOC100812551), transcript variant X1, mRNA	RNA-binding protein 2-like(LOC100812551)	coding protein	psRNATarget
XM_003556095.3	ncRNA:21   GAGAAGUAGAAGUGGUAAGUA   1   *|||||||||||||||*|||* targets:316   AUCUUCAUCUUCACCAAUCAA   336 Target Full Sequence	2.5	PREDICTED: Glycine max RNA-binding protein 2-like (LOC100812551), transcript variant X2, mRNA	RNA-binding protein 2-like(LOC100812551)	coding protein	psRNATarget
XM_003556096.3	ncRNA:21   GAGAAGUAGAAGUGGUAAGUA   1   *|||||||||||||||*|||* targets:323   AUCUUCAUCUUCACCAAUCAA   343 Target Full Sequence	2.5	PREDICTED: Glycine max RNA-binding protein 2-like (LOC100812551), transcript variant X4, mRNA	RNA-binding protein 2-like(LOC100812551)	coding protein	psRNATarget
XM_014773036.1	ncRNA:21   GAGAAGUAGAAGUGGUAAGUA   1   *|||||||||||||||*|||* targets:319   AUCUUCAUCUUCACCAAUCAA   339 Target Full Sequence	2.5	PREDICTED: Glycine max RNA-binding protein 2-like (LOC100812551), transcript variant X5, mRNA	RNA-binding protein 2-like(LOC100812551)	coding protein	psRNATarget
XM_006589434.2	ncRNA:21   GAGAAGUAGAAGUGGUAAGUA   1   *|||||||||||||||*|||* targets:130   AUCUUCAUCUUCACCAAUCAA   150 Target Full Sequence	2.5	PREDICTED: Glycine max RNA-binding protein 2-like (LOC100816230), transcript variant X1, mRNA	RNA-binding protein 2-like(LOC100816230)	coding protein	psRNATarget
XM_003536387.3	ncRNA:21   GAGAAGUAGAAGUGGUAAGUA   1   *|||||||||||||||*|||* targets:126   AUCUUCAUCUUCACCAAUCAA   146 Target Full Sequence	2.5	PREDICTED: Glycine max RNA-binding protein 2-like (LOC100816230), transcript variant X2, mRNA	RNA-binding protein 2-like(LOC100816230)	coding protein	psRNATarget

Reference

1	PMID:24475082 "Systems and evolutionary characterization of microRNAs and their underlying regulatory networks in soybean cotyledons"; Goettel W, Liu Z, Xia J, Zhang W, Zhao PX, An YQ; PLoS One. 9:e86153(2014).