ncRNA ID | gma-miR319g |
Species | Glycine max |
Class | miRNA |
Genome position | chr2:43885398-43885595 [+] |
Reference genome | v1.0 |
Source | miRBase |
Length | 22 |
Mature sequence(if miRNA) | 164 - UUGGACUGAAGGGAGCUCCUUC - 185 |
Stem-loop(if miRNA) |
     -      U            C    C   UU      UAUAAU      UU     G UGAAUUAACUGA       AUACAAUAGUAUUCAAUUAGGGUAA GGGAA AGAGAG GAAGGAGUUUCC UCAG CCA  CAUGGA      GAAAGA  GGGUU C            UUCAUUC                         U ||||| |||||| |||||||||||| |||| |||  ||||||      ||||||  ||||| |            |||||||                         A CCCUU UCUUUU CUUCCUCGAGGG AGUC GGU  GUGUCU      CUUUCU  CCCAA G            UUAUAUC                         U      G      U            A    A   UC      ------      CC     G ------------       UAUGAUAUGAGAGAAGUAAGUGUGU |
Stem-loop sequence | GGGAAAGAGAGUGAAGGAGUUUCCCUCAGCCCAUUCAUGGAUAUAAUGAAAGAUUGGGUUGCUGAAUUAACUGAUUCAUUCAUACAAUAGUAUUCAAUUAGGGUAAUAUUGUGUGAAUGAAGAGAGUAUAGUAUCUAUAUUGGAACCCCCUCUUUCUCUGUGCUUGGACUGAAGGGAGCUCCUUCUUUUUCUGUUCCC |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
JB170935.1 |
|
0.0 | Sequence 8599 from Patent EP2559767 | NA | coding protein | psRNATarget | |||||||||
LQ242604.1 |
|
0.0 | Sequence 8599 from Patent EP2985353 | NA | coding protein | psRNATarget | |||||||||
HI410474.1 |
|
0.0 | Sequence 8599 from Patent EP2074227 | NA | coding protein | psRNATarget | |||||||||
BT098668.1 |
|
0.0 | Soybean clone JCVI-FLGm-12F22 unknown mRNA | NA | coding protein | psRNATarget |
1 | PMID:21663675
"Identification of novel soybean microRNAs involved in abiotic and biotic stresses"; Kulcheski FR, de Oliveira LF, Molina LG, Almerao MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimaraes FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R; BMC Genomics. 12:307(2011). |