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BaseInfo

ncRNA ID ath-miR5635a
Species Arabidopsis thaliana
Class miRNA
Genome position chr5:6926005-6926446 [+]
Reference genome TAIR10
Source miRBase
Length 21
Mature sequence(if miRNA) 268 - UGUUAAGGAGUGUUAACGGUG - 288
Stem-loop(if miRNA) AUUAAU     CCGAGAAAAAUGUUAUUUUAUACCUGAACUUUCAAAAAGUGGCCAAAUUAACCGUGAAUUUUUGAAAUGAUCGUUUUAUACCUCAACAAAAAGUUGACUUCUAAUUUAACCUAUAAGUUAUCGUUGACCCGGCCAAAUCGACUCACCAUUAACACUUCUUAACAGCUCUCCUAACAGCGUAACUAACAACUGUUUUUGUCCUUAAACCAACA
      UAACA                                                                                                                                                                                                                    A
      |||||
      UAUGG                                                                                                                                                                                                                    U
------     ACUUGAAAGUUUUUUACCGGUUUAAUUGGCACUUGAAAACUUUACCAGCAAAAUAUGGAGUUGUUUUUCAACUGAAGAUUAAAUUGGAUAUUAAAUAGCAACUGAAGAUUAAACUGGAUAUUAAACAGCAACUGGGCCGGUUUAUAUGAGUGGCAAUUGUGAGGAAUUGUCGCAAGGAUUGUCGGCAAUGUUUUGUACCGGAUUGUCGGCAA
Stem-loop sequence AUUAAUUAACACCGAGAAAAAUGUUAUUUUAUACCUGAACUUUCAAAAAGUGGCCAAAUUAACCGUGAAUUUUUGAAAUGAUCGUUUUAUACCUCAACAAAAAGUUGACUUCUAAUUUAACCUAUAAGUUAUCGUUGACCCGGCCAAAUCGACUCACCAUUAACACUUCUUAACAGCUCUCCUAACAGCGUAACUAACAACUGUUUUUGUCCUUAAACCAACAAUAACGGCUGUUAGGCCAUGUUUUGUAACGGCUGUUAGGAACGCUGUUAAGGAGUGUUAACGGUGAGUAUAUUUGGCCGGGUCAACGACAAAUUAUAGGUCAAAUUAGAAGUCAACGAUAAAUUAUAGGUUAAAUUAGAAGUCAACUUUUUGUUGAGGUAUAAAACGACCAUUUCAAAAGUUCACGGUUAAUUUGGCCAUUUUUUGAAAGUUCAGGUAU

Reference

1 PMID:21940835
"High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis";
Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN;
Genome Res. 22:163-176(2012).