ncRNA ID | ath-miR5635a |
Species | Arabidopsis thaliana |
Class | miRNA |
Genome position | chr5:6926005-6926446 [+] |
Reference genome | TAIR10 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 268 - UGUUAAGGAGUGUUAACGGUG - 288 |
Stem-loop(if miRNA) |
AUUAAU     CCGAGAAAAAUGUUAUUUUAUACCUGAACUUUCAAAAAGUGGCCAAAUUAACCGUGAAUUUUUGAAAUGAUCGUUUUAUACCUCAACAAAAAGUUGACUUCUAAUUUAACCUAUAAGUUAUCGUUGACCCGGCCAAAUCGACUCACCAUUAACACUUCUUAACAGCUCUCCUAACAGCGUAACUAACAACUGUUUUUGUCCUUAAACCAACA       UAACA                                                                                                                                                                                                                    A       |||||       UAUGG                                                                                                                                                                                                                    U ------     ACUUGAAAGUUUUUUACCGGUUUAAUUGGCACUUGAAAACUUUACCAGCAAAAUAUGGAGUUGUUUUUCAACUGAAGAUUAAAUUGGAUAUUAAAUAGCAACUGAAGAUUAAACUGGAUAUUAAACAGCAACUGGGCCGGUUUAUAUGAGUGGCAAUUGUGAGGAAUUGUCGCAAGGAUUGUCGGCAAUGUUUUGUACCGGAUUGUCGGCAA |
Stem-loop sequence | AUUAAUUAACACCGAGAAAAAUGUUAUUUUAUACCUGAACUUUCAAAAAGUGGCCAAAUUAACCGUGAAUUUUUGAAAUGAUCGUUUUAUACCUCAACAAAAAGUUGACUUCUAAUUUAACCUAUAAGUUAUCGUUGACCCGGCCAAAUCGACUCACCAUUAACACUUCUUAACAGCUCUCCUAACAGCGUAACUAACAACUGUUUUUGUCCUUAAACCAACAAUAACGGCUGUUAGGCCAUGUUUUGUAACGGCUGUUAGGAACGCUGUUAAGGAGUGUUAACGGUGAGUAUAUUUGGCCGGGUCAACGACAAAUUAUAGGUCAAAUUAGAAGUCAACGAUAAAUUAUAGGUUAAAUUAGAAGUCAACUUUUUGUUGAGGUAUAAAACGACCAUUUCAAAAGUUCACGGUUAAUUUGGCCAUUUUUUGAAAGUUCAGGUAU |
1 | PMID:21940835
"High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis"; Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN; Genome Res. 22:163-176(2012). |