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BaseInfo

ncRNA ID	ath-miR165a-3p
Species	Arabidopsis thaliana
Class	miRNA
Genome position	chr1:78927-79037 [-]
Reference genome	TAIR10
Source	miRBase
Length	21
Mature sequence(if miRNA)	6 - UCGGACCAGGCUUCAUCCCCC - 26
Stem-loop(if miRNA)	A    A   UU      A           -AUA      UACAUGUGUAUG GUUG GGGG AUG  GUCUGG UCGAGGAUAUU    GAUAUA            U |||| |||| |||  |||||| |||||||||||    |||||| CAAC CCCC UAC  CGGACC GGCUCCUAUGA    UACUAG            U     C    C   UU      A           GAGA      UGAACUUAGUAA
Stem-loop sequence	GUUGAGGGGAAUGUUGUCUGGAUCGAGGAUAUUAUAGAUAUAUACAUGUGUAUGUUAAUGAUUCAAGUGAUCAUAGAGAGUAUCCUCGGACCAGGCUUCAUCCCCCCCAAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AJ441292.1	ncRNA:21   CCCCCUACUUCGGACCAGGCU   1   **||||||||||||||||||= targets:548   CUGGGAUGAAGCCUGGUCCGG   568 Target Full Sequence	1.0	Arabidopsis thaliana mRNA for homeodomain-leucine zipper protein 8 (hb-8 gene)	NA	coding protein	psRNATarget
BT008798.1	ncRNA:21   CCCCCUACUUCGGACCAGGCU   1   **||||||||||||||||||= targets:548   CUGGGAUGAAGCCUGGUCCGG   568 Target Full Sequence	1.0	Arabidopsis thaliana At4g32880 gene, complete cds	NA	coding protein	psRNATarget
AJ440967.1	ncRNA:21   CCCCCUACUUCGGACCAGGCU   1   **||||||||||||||||||= targets:578   UUGGGAUGAAGCCUGGUCCGG   598 Target Full Sequence	1.0	Arabidopsis thaliana mRNA for homeodomain-leucine zipper protein (hb9 gene)	NA	coding protein	psRNATarget
AJ441291.1	ncRNA:21   CCCCCUACUUCGGACCAGGCU   1   **||||||||||||||||||= targets:590   UUGGGAUGAAGCCUGGUCCGG   610 Target Full Sequence	1.0	Arabidopsis thaliana mRNA for homeodomain-leucine zipper protein 14 (ATHB-14 gene)	NA	coding protein	psRNATarget
BT000335.1	ncRNA:21   CCCCCUACUUCGGACCAGGCU   1   **||||||||||||||||||= targets:590   UUGGGAUGAAGCCUGGUCCGG   610 Target Full Sequence	1.0	Arabidopsis thaliana homeodomain transcription factor (At2g34710) mRNA, complete cds	NA	coding protein	psRNATarget
AF233592.1	ncRNA:21   CCCCCUACUUCGGACCAGGCU   1   **||||||||||||||||||= targets:738   CUGGGAUGAAGCCUGGUCCGG   758 Target Full Sequence	1.0	Arabidopsis thaliana REVOLUTA mRNA, complete cds	NA	coding protein	psRNATarget
AK226570.1	ncRNA:21   CCCCCUACUUCGGACCAGGCU   1   **||||||||||||||||||= targets:792   UUGGGAUGAAGCCUGGUCCGG   812 Target Full Sequence	1.0	Arabidopsis thaliana mRNA for HD-Zip protein, complete cds, clone: RAFL07-12-P11	NA	coding protein	psRNATarget
BX815318.1	ncRNA:21   CCCCCUACUUCGGACCAGGCU   1   **||||||||||||||||||= targets:791   UUGGGAUGAAGCCUGGUCCGG   811 Target Full Sequence	1.0	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS51ZC10 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
AY099631.1	ncRNA:21   CCCCCUACUUCGGACCAGGCU   1   **||||||||||||||||||= targets:934   CUGGGAUGAAGCCUGGUCCGG   954 Target Full Sequence	1.0	Arabidopsis thaliana HD-zip transcription factor (athb-8) (At4g32880) mRNA, complete cds	NA	coding protein	psRNATarget
AY099791.1	ncRNA:21   CCCCCUACUUCGGACCAGGCU   1   **||||||||||||||||||= targets:868   UUGGGAUGAAGCCUGGUCCGG   888 Target Full Sequence	1.0	Arabidopsis thaliana homeodomain transcription factor (At2g34710) mRNA, complete cds	NA	coding protein	psRNATarget
NM_102785.5	ncRNA:21   CCCCCUACUUCGGACCAGGCU   1   **||||||||||||||||||= targets:927   UUGGGAUGAAGCCUGGUCCGG   947 Target Full Sequence	1.0	Arabidopsis thaliana Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (PHV), mRNA	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein(PHV)	coding protein	psRNATarget
NM_129025.4	ncRNA:21   CCCCCUACUUCGGACCAGGCU   1   **||||||||||||||||||= targets:952   UUGGGAUGAAGCCUGGUCCGG   972 Target Full Sequence	1.0	Arabidopsis thaliana Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (PHB), mRNA	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein(PHB)	coding protein	psRNATarget
BX830562.1	ncRNA:21   CCCCCUACUUCGGACCAGGCU   1   **||||||||||||||||||= targets:1166   CUGGGAUGAAGCCUGGUCCGG   1186 Target Full Sequence	1.0	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB90ZC01 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
NM_119441.5	ncRNA:21   CCCCCUACUUCGGACCAGGCU   1   **||||||||||||||||||= targets:959   CUGGGAUGAAGCCUGGUCCGG   979 Target Full Sequence	1.0	Arabidopsis thaliana homeobox-leucine zipper protein ATHB-8 (HB-8), mRNA	homeobox-leucine zipper protein ATHB-8(HB-8)	coding protein	psRNATarget
AF188994.1	ncRNA:21   CCCCCUACUUCGGACCAGGCU   1   **||||||||||||||||||= targets:1055   CUGGGAUGAAGCCUGGUCCGG   1075 Target Full Sequence	1.0	Arabidopsis thaliana homeodomain-leucine zipper protein interfascicular fiberless 1 (IFL1) mRNA, complete cds	NA	coding protein	psRNATarget
AK229564.1	ncRNA:21   CCCCCUACUUCGGACCAGGCU   1   **||||||||||||||||||= targets:1262   CUGGGAUGAAGCCUGGUCCGG   1282 Target Full Sequence	1.0	Arabidopsis thaliana mRNA for REVOLUTA or interfascicular fiberless 1, complete cds, clone: RAFL19-08-C22	NA	coding protein	psRNATarget
NM_125462.4	ncRNA:21   CCCCCUACUUCGGACCAGGCU   1   **||||||||||||||||||= targets:1304   CUGGGAUGAAGCCUGGUCCGG   1324 Target Full Sequence	1.0	Arabidopsis thaliana Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (REV), mRNA	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein(REV)	coding protein	psRNATarget
AK317723.1	ncRNA:21   CCCCCUACUUCGGACCAGGCU   1   **||*|||||||||||||||= targets:151   CUGGAAUGAAGCCUGGUCCGG   171 Target Full Sequence	2.0	Arabidopsis thaliana AT1G52150 mRNA, partial cds, clone: RAFL24-23-E10	NA	coding protein	psRNATarget
AJ439449.1	ncRNA:21   CCCCCUACUUCGGACCAGGCU   1   **||*|||||||||||||||= targets:551   CUGGAAUGAAGCCUGGUCCGG   571 Target Full Sequence	2.0	Arabidopsis thaliana mRNA for homeodomain-leucine zipper protein (ATHB-15 gene)	NA	coding protein	psRNATarget
AY060556.1	ncRNA:21   CCCCCUACUUCGGACCAGGCU   1   **||*|||||||||||||||= targets:1268   CUGGAAUGAAGCCUGGUCCGG   1288 Target Full Sequence	2.0	Arabidopsis thaliana At1g52150/F5F19_21 mRNA, complete cds	NA	coding protein	psRNATarget
NM_179464.1	ncRNA:21   CCCCCUACUUCGGACCAGGCU   1   **||*|||||||||||||||= targets:1268   CUGGAAUGAAGCCUGGUCCGG   1288 Target Full Sequence	2.0	Arabidopsis thaliana Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (ATHB-15), mRNA	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein(ATHB-15)	coding protein	psRNATarget
NM_104096.3	ncRNA:21   CCCCCUACUUCGGACCAGGCU   1   **||*|||||||||||||||= targets:1354   CUGGAAUGAAGCCUGGUCCGG   1374 Target Full Sequence	2.0	Arabidopsis thaliana Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (ATHB-15), mRNA	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein(ATHB-15)	coding protein	psRNATarget
NM_001084233.2	ncRNA:21   CCCCCUACUUCGGACCAGGCU   1   **||*|||||||||||||||= targets:1354   CUGGAAUGAAGCCUGGUCCGG   1374 Target Full Sequence	2.0	Arabidopsis thaliana Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (ATHB-15), mRNA	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein(ATHB-15)	coding protein	psRNATarget

Reference

1	PMID:12101121 "MicroRNAs in plants"; Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP; Genes Dev. 16:1616-1626(2002).
2	PMID:12202040 "Prediction of plant microRNA targets"; Rhoades MW, Reinhart BJ, Lim LP, Burge CB, Bartel B, Bartel DP; Cell. 110:513-520(2002).
3	PMID:16040653 "Expression of Arabidopsis MIRNA genes"; Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC; Plant Physiol. 138:2145-2154(2005).
4	PMID:16954541 "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant"; Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC; Genome Res. 16:1276-1288(2006).
5	PMID:17182867 "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"; Rajagopalan R, Vaucheret H, Trejo J, Bartel DP; Genes Dev. 20:3407-3425(2006).
6	PMID:19815687 "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis"; Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW; J Exp Bot. 61:165-177(2010).