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BaseInfo

ncRNA ID	gma-miR4416c
Species	Glycine max
Class	miRNA
Genome position	chr2:30498940-30499135 [-]
Reference genome	v1.0
Source	miRBase
Length	21
Mature sequence(if miRNA)	151 - CUGGGUGAGAGAAACACGUAU - 171
Stem-loop(if miRNA)	----   UUUUU  G   U  C        UG        AA  A       AAGAAG  U  U GC         A   --U        GCUGAAC    CAU     UCA     CU UGG CA UUCUGCUC  GGUGAGAG  AC CGUAUUG      GU CA G  UUAGACAAU AGU   GCUACUUU       UCAC   U     |||     || ||| || ||||||||  ||||||||  || |||||||      || || |  ||||||||| |||   ||||||||       ||||     AGU     GA ACC GU GGGAUGAG  CCACUCUC  UG GCAUAGC      CA GU C  AGUUUGUUA UCG   CGGUGAAG       AGUG   U AAAU   --UUC  A   C  C        GU        GC  G       -AUGCA  U  - UU         A   UAU        ------A    UAU
Stem-loop sequence	UCAUUUUUCUGUGGUCACUUCUGCUCUGGGUGAGAGAAACACGUAUUGAAGAAGGUUCAUGGCUUAGACAAUAAGUUGCUACUUUGCUGAACUCACCAUUUUAUGUGAAGAAGUGGCUAUGCUAAUUGUUUGAUUCUGUACACGUACGAUACGGGUCGCUCUCACCUGGAGUAGGGCUGCCCAAAGCUUUGAUAAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_014776670.1	ncRNA:21   UAUGCACAAAGAGAGUGGGUC   1   *|=||*||||||||||||||* targets:400   CUGCGAGUUUCUCUCACCCAU   420 Target Full Sequence	3.0	PREDICTED: Glycine max AUGMIN subunit 8-like (LOC100802440), transcript variant X8, mRNA	AUGMIN subunit 8-like(LOC100802440)	coding protein	psRNATarget
XM_014776673.1	ncRNA:21   UAUGCACAAAGAGAGUGGGUC   1   *|=||*||||||||||||||* targets:400   CUGCGAGUUUCUCUCACCCAU   420 Target Full Sequence	3.0	PREDICTED: Glycine max AUGMIN subunit 8-like (LOC100802440), transcript variant X10, mRNA	AUGMIN subunit 8-like(LOC100802440)	coding protein	psRNATarget
XM_003525899.3	ncRNA:21   UAUGCACAAAGAGAGUGGGUC   1   *|=||*||||||||||||||* targets:399   CUGCGAGUUUCUCUCACCCAU   419 Target Full Sequence	3.0	PREDICTED: Glycine max AUGMIN subunit 8-like (LOC100802440), transcript variant X2, mRNA	AUGMIN subunit 8-like(LOC100802440)	coding protein	psRNATarget
XM_006582048.2	ncRNA:21   UAUGCACAAAGAGAGUGGGUC   1   *|=||*||||||||||||||* targets:399   CUGCGAGUUUCUCUCACCCAU   419 Target Full Sequence	3.0	PREDICTED: Glycine max AUGMIN subunit 8-like (LOC100802440), transcript variant X5, mRNA	AUGMIN subunit 8-like(LOC100802440)	coding protein	psRNATarget
XM_006582050.2	ncRNA:21   UAUGCACAAAGAGAGUGGGUC   1   *|=||*||||||||||||||* targets:406   CUGCGAGUUUCUCUCACCCAU   426 Target Full Sequence	3.0	PREDICTED: Glycine max AUGMIN subunit 8-like (LOC100802440), transcript variant X12, mRNA	AUGMIN subunit 8-like(LOC100802440)	coding protein	psRNATarget
XM_014776669.1	ncRNA:21   UAUGCACAAAGAGAGUGGGUC   1   *|=||*||||||||||||||* targets:400   CUGCGAGUUUCUCUCACCCAU   420 Target Full Sequence	3.0	PREDICTED: Glycine max AUGMIN subunit 8-like (LOC100802440), transcript variant X7, mRNA	AUGMIN subunit 8-like(LOC100802440)	coding protein	psRNATarget
XM_006582045.2	ncRNA:21   UAUGCACAAAGAGAGUGGGUC   1   *|=||*||||||||||||||* targets:399   CUGCGAGUUUCUCUCACCCAU   419 Target Full Sequence	3.0	PREDICTED: Glycine max AUGMIN subunit 8-like (LOC100802440), transcript variant X1, mRNA	AUGMIN subunit 8-like(LOC100802440)	coding protein	psRNATarget
XM_006582046.2	ncRNA:21   UAUGCACAAAGAGAGUGGGUC   1   *|=||*||||||||||||||* targets:399   CUGCGAGUUUCUCUCACCCAU   419 Target Full Sequence	3.0	PREDICTED: Glycine max AUGMIN subunit 8-like (LOC100802440), transcript variant X3, mRNA	AUGMIN subunit 8-like(LOC100802440)	coding protein	psRNATarget
XM_003523984.3	ncRNA:21   UAUGCACAAAGAGAGUGGGUC   1   **=||*||||||||||||||* targets:1019   CAGCGAGUUUCUCUCACCCAU   1039 Target Full Sequence	3.0	PREDICTED: Glycine max AUGMIN subunit 8 (LOC100796917), transcript variant X1, mRNA	AUGMIN subunit 8(LOC100796917)	coding protein	psRNATarget
XM_014774693.1	ncRNA:21   UAUGCACAAAGAGAGUGGGUC   1   **=||*||||||||||||||* targets:1019   CAGCGAGUUUCUCUCACCCAU   1039 Target Full Sequence	3.0	PREDICTED: Glycine max AUGMIN subunit 8 (LOC100796917), transcript variant X5, mRNA	AUGMIN subunit 8(LOC100796917)	coding protein	psRNATarget

Reference

1

PMID:22156213 "MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs"; Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC; Genes Dev. 25:2540-2553(2011).