| ncRNA ID | gma-miR5677 |
| Species | Glycine max |
| Class | miRNA |
| Genome position | chr2:14614766-14614989 [-] |
| Reference genome | v1.0 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 11 - UUUGGUCUUUAAUCAAGCUGA - 31 |
| Stem-loop(if miRNA) |
C C C G A C A UC GA --- -----------U AGAAGG C GAAGCAC -- GAGAGUAGAUUGCAUGGUUU ACGA AGCCA U A CUUGGU AAA ACCAAAU UCAG AUAUUAU UCAUG ACAA CCA UG CAGUCA U U |||| ||||| | | |||||| ||| ||||||| |||| ||||||| ||||| |||| ||| || |||||| | UGUU UUGGU A U GAACUA UUU UGGUUUA AGUU UAUAGUA GGUAC UGUU GGU AC CGAGAG A U - - A G C A C GA UC AAU UUUAGAGAUAAU GAAGGA U --AGGAA AA GGGGAGAAAAAGUCUUCUGA |
| Stem-loop sequence | CACGACAGCCACUGAACUUGGUCAAAAACCAAAUUCUCAGGAAUAUUAUUCAUGUACAAAGAAGGCCACUGGAAGCACCAGUCAUGAGAGUAGAUUGCAUGGUUUUUAGUCUUCUGAAAAAGAGGGGAAAGAGAGCAAGGACAUUGGAGGAAGUUGUUAAUAGAGAUUUCAUGGUAAAUGAUAUCUUUGAAGAUUUGGUCUUUAAUCAAGCUGAAUGGUUUUGU |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| XM_006596298.2 |
|
2.5 | PREDICTED: Glycine max chaperone protein dnaJ 1, mitochondrial (LOC100799962), transcript variant X3, mRNA | chaperone protein dnaJ 1, mitochondrial(LOC100799962) | coding protein | psRNATarget | |||||||||
| XM_006596299.2 |
|
2.5 | PREDICTED: Glycine max chaperone protein dnaJ 1, mitochondrial (LOC100799962), transcript variant X4, mRNA | chaperone protein dnaJ 1, mitochondrial(LOC100799962) | coding protein | psRNATarget | |||||||||
| XM_003521107.3 |
|
3.0 | PREDICTED: Glycine max uncharacterized LOC100793368 (LOC100793368), mRNA | uncharacterized LOC100793368(LOC100793368) | coding protein | psRNATarget |
| 1 | PMID:21219599
"Identification of miRNAs and their target genes in developing soybean seeds by deep sequencing"; Song QX, Liu YF, Hu XY, Zhang WK, Ma B, Chen SY, Zhang JS; BMC Plant Biol. 11:5(2011). |