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BaseInfo

ncRNA ID	ath-miR865-3p
Species	Arabidopsis thaliana
Class	miRNA
Genome position	chr5:5169990-5170131 [+]
Reference genome	TAIR10
Source	miRBase
Length	21
Mature sequence(if miRNA)	108 - UUUUUCCUCAAAUUUAUCCAA - 128
Stem-loop(if miRNA)	C        A       CU A     C     AU    UUUU      CU       UUCA  UCCUU GAU UGGGAUGA UUUGGAU  A UUGAG AAAAA  UGUG    UUCAAU  AUUGAAU    CA     A ||| |||||||| |||||||  | ||||| |||||  ||||    ||||||  |||||||    || CUA ACCCUACU AAACCUA  U AACUC UUUUU  ACGC    AAGUUA  UAACUUA    GU     A    A        A       UU A     C     AU    -UUU      UC       -UAC  UCCCA
Stem-loop sequence	GAUCUGGGAUGAAUUUGGAUCUAAUUGAGCAAAAAAUUGUGUUUUUUCAAUCUAUUGAAUUUCACAUCCUUAAACCCUUGCAUAUUCAAUCUAUUGAAUUUCGCAUAUUUUUCCUCAAAUUUAUCCAAAAUCAUCCCAAAUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT026469.1	ncRNA:21   AACCUAUUUAAACUCCUUUUU   1   *||||*|||||||||||=||| targets:601   CUGGAGAAAUUUGAGGAGAAA   621 Target Full Sequence	2.5	Arabidopsis thaliana At2g34900 mRNA, complete cds	NA	coding protein	psRNATarget
AY180100.1	ncRNA:21   AACCUAUUUAAACUCCUUUUU   1   *||||*|||||||||||=||| targets:601   CUGGAGAAAUUUGAGGAGAAA   621 Target Full Sequence	2.5	Arabidopsis thaliana IMB1 (At2g34900) mRNA, complete cds	NA	coding protein	psRNATarget
BX820082.1	ncRNA:21   AACCUAUUUAAACUCCUUUUU   1   *||||*|||||||||||=||| targets:666   CUGGAGAAAUUUGAGGAGAAA   686 Target Full Sequence	2.5	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS71ZG11 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
AK222242.1	ncRNA:21   AACCUAUUUAAACUCCUUUUU   1   *||||*|||||||||||=||| targets:638   CUGGAGAAAUUUGAGGAGAAA   658 Target Full Sequence	2.5	Arabidopsis thaliana mRNA for RING3 protein-like, complete cds, clone: RAFL25-49-G02	NA	coding protein	psRNATarget
BX820056.1	ncRNA:21   AACCUAUUUAAACUCCUUUUU   1   *||||*|||||||||||=||| targets:634   CUGGAGAAAUUUGAGGAGAAA   654 Target Full Sequence	2.5	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS69ZF03 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
NM_201873.2	ncRNA:21   AACCUAUUUAAACUCCUUUUU   1   *||||*|||||||||||=||| targets:670   CUGGAGAAAUUUGAGGAGAAA   690 Target Full Sequence	2.5	Arabidopsis thaliana Transcription factor GTE6 (IMB1), mRNA	Transcription factor GTE6(IMB1)	coding protein	psRNATarget
AK230434.1	ncRNA:21   AACCUAUUUAAACUCCUUUUU   1   *||||*|||||||||||=||| targets:685   CUGGAGAAAUUUGAGGAGAAA   705 Target Full Sequence	2.5	Arabidopsis thaliana mRNA for RING3 protein-like, complete cds, clone: RAFL25-39-I22	NA	coding protein	psRNATarget
NM_129043.5	ncRNA:21   AACCUAUUUAAACUCCUUUUU   1   *||||*|||||||||||=||| targets:723   CUGGAGAAAUUUGAGGAGAAA   743 Target Full Sequence	2.5	Arabidopsis thaliana Transcription factor GTE6 (IMB1), mRNA	Transcription factor GTE6(IMB1)	coding protein	psRNATarget
NM_126777.1	ncRNA:21   AACCUAUUUAAACUCCUUUUU   1   ||||||==||||||||||||* targets:933   UUGGAUGGAUUUGAGGAAAAC   953 Target Full Sequence	3.0	Arabidopsis thaliana DEA(D/H)-box RNA helicase family protein mRNA	DEA(D/H)-box RNA helicase family protein(AT2G07750)	coding protein	psRNATarget

Reference

1	PMID:17299599 "High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes"; Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC; PLoS One. 2:e219(2007).
2	PMID:24119003 "Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots"; Vidal EA, Moyano TC, Krouk G, Katari MS, Tanurdzic M, McCombie WR, Coruzzi GM, Gutierrez RA; BMC Genomics. 14:701(2013).