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BaseInfo

ncRNA ID	gma-miR169b
Species	Glycine max
Class	miRNA
Genome position	chr2:10422863-10423045 [+]
Reference genome	v1.0
Source	miRBase
Length	21
Mature sequence(if miRNA)	11 - CAGCCAAGGAUGACUUGCCGA - 31
Stem-loop(if miRNA)	UAU    C  C                    -UAA     U       UUUG       ---AUUC         AAUUGAUAGUGCAUUAGU    GAUG UG AGCCAAGGAUGACUUGCCGA    AUUCU UCUCUAA    ACUUUCA       AUGUUUGUC                  U    |||| || ||||||||||||||||||||    ||||| |||||||    |||||||       |||||||||    CUGU AC UCGGUUUCUACUGAACGGCU    UGGGA AGGGAUU    UGAAAGU       CAAGAUAUA                  C UAU    -  A                    UAAA     U       UCUG       GUUAUCA         UUAGUUUACGUAUAUAAU
Stem-loop sequence	UAUGAUGCUGCAGCCAAGGAUGACUUGCCGAUAAAUUCUUUCUCUAAUUUGACUUUCAAUUCAUGUUUGUCAAUUGAUAGUGCAUUAGUUCUAAUAUAUGCAUUUGAUUAUAUAGAACACUAUUGUGAAAGUGUCUUUAGGGAUAGGGUAAAUUCGGCAAGUCAUCUUUGGCUACAUGUCUAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_006597141.2	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   |=||*|||||||||||||||* targets:1128   UUGGGAAGUCAUCCUUGGCUC   1148 Target Full Sequence	2.0	PREDICTED: Glycine max nuclear transcription factor Y subunit A-3-like (LOC100803893), transcript variant X5, mRNA	nuclear transcription factor Y subunit A-3-like(LOC100803893)	coding protein	psRNATarget
XM_006597140.2	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   |=||*|||||||||||||||* targets:1192   UUGGGAAGUCAUCCUUGGCUC   1212 Target Full Sequence	2.0	PREDICTED: Glycine max nuclear transcription factor Y subunit A-3-like (LOC100803893), transcript variant X4, mRNA	nuclear transcription factor Y subunit A-3-like(LOC100803893)	coding protein	psRNATarget
XM_006597138.2	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   |=||*|||||||||||||||* targets:1206   UUGGGAAGUCAUCCUUGGCUC   1226 Target Full Sequence	2.0	PREDICTED: Glycine max nuclear transcription factor Y subunit A-3-like (LOC100803893), transcript variant X2, mRNA	nuclear transcription factor Y subunit A-3-like(LOC100803893)	coding protein	psRNATarget
XM_006597137.2	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   |=||*|||||||||||||||* targets:1209   UUGGGAAGUCAUCCUUGGCUC   1229 Target Full Sequence	2.0	PREDICTED: Glycine max nuclear transcription factor Y subunit A-3-like (LOC100803893), transcript variant X1, mRNA	nuclear transcription factor Y subunit A-3-like(LOC100803893)	coding protein	psRNATarget
XM_014767375.1	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   |=||*|||||||||||||||* targets:1237   UUGGGAAGUCAUCCUUGGCUC   1257 Target Full Sequence	2.0	PREDICTED: Glycine max nuclear transcription factor Y subunit A-3-like (LOC100803893), transcript variant X3, mRNA	nuclear transcription factor Y subunit A-3-like(LOC100803893)	coding protein	psRNATarget
XM_014763055.1	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   |*|||||*||||||||||||* targets:1298   UAGGCAACUCAUCCUUGGCUC   1318 Target Full Sequence	2.0	PREDICTED: Glycine max nuclear transcription factor Y subunit A-10-like (LOC100794755), transcript variant X3, mRNA	nuclear transcription factor Y subunit A-10-like(LOC100794755)	coding protein	psRNATarget
XM_006604597.2	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   |*|||||*||||||||||||* targets:1309   UAGGCAACUCAUCCUUGGCUC   1329 Target Full Sequence	2.0	PREDICTED: Glycine max nuclear transcription factor Y subunit A-10-like (LOC100815382), transcript variant X4, mRNA	nuclear transcription factor Y subunit A-10-like(LOC100815382)	coding protein	psRNATarget
XM_014771397.1	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   |*|||||*||||||||||||* targets:1320   UAGGCAACUCAUCCUUGGCUC   1340 Target Full Sequence	2.0	PREDICTED: Glycine max nuclear transcription factor Y subunit A-10-like (LOC100815382), transcript variant X1, mRNA	nuclear transcription factor Y subunit A-10-like(LOC100815382)	coding protein	psRNATarget
XM_006604599.2	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   |*|||||*||||||||||||* targets:1352   UAGGCAACUCAUCCUUGGCUC   1372 Target Full Sequence	2.0	PREDICTED: Glycine max nuclear transcription factor Y subunit A-10-like (LOC100815382), transcript variant X7, mRNA	nuclear transcription factor Y subunit A-10-like(LOC100815382)	coding protein	psRNATarget
XM_006604598.2	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   |*|||||*||||||||||||* targets:1357   UAGGCAACUCAUCCUUGGCUC   1377 Target Full Sequence	2.0	PREDICTED: Glycine max nuclear transcription factor Y subunit A-10-like (LOC100815382), transcript variant X6, mRNA	nuclear transcription factor Y subunit A-10-like(LOC100815382)	coding protein	psRNATarget
XM_014771399.1	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   |*|||||*||||||||||||* targets:1365   UAGGCAACUCAUCCUUGGCUC   1385 Target Full Sequence	2.0	PREDICTED: Glycine max nuclear transcription factor Y subunit A-10-like (LOC100815382), transcript variant X5, mRNA	nuclear transcription factor Y subunit A-10-like(LOC100815382)	coding protein	psRNATarget
XM_006604596.2	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   |*|||||*||||||||||||* targets:1407   UAGGCAACUCAUCCUUGGCUC   1427 Target Full Sequence	2.0	PREDICTED: Glycine max nuclear transcription factor Y subunit A-10-like (LOC100815382), transcript variant X3, mRNA	nuclear transcription factor Y subunit A-10-like(LOC100815382)	coding protein	psRNATarget
XM_006604595.2	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   |*|||||*||||||||||||* targets:1419   UAGGCAACUCAUCCUUGGCUC   1439 Target Full Sequence	2.0	PREDICTED: Glycine max nuclear transcription factor Y subunit A-10-like (LOC100815382), transcript variant X2, mRNA	nuclear transcription factor Y subunit A-10-like(LOC100815382)	coding protein	psRNATarget
XM_006598746.2	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   |*||*|||||||||||||||* targets:1488   UAGGGAAGUCAUCCUUGGCUC   1508 Target Full Sequence	2.0	PREDICTED: Glycine max nuclear transcription factor Y subunit A-3-like (LOC100803903), mRNA	nuclear transcription factor Y subunit A-3-like(LOC100803903)	coding protein	psRNATarget
XM_014768398.1	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   |*|||||*||||||||||||* targets:1439   UAGGCAACUCAUCCUUGGCUC   1459 Target Full Sequence	2.0	PREDICTED: Glycine max nuclear transcription factor Y subunit A-10-like (LOC100808195), transcript variant X9, mRNA	nuclear transcription factor Y subunit A-10-like(LOC100808195)	coding protein	psRNATarget
XM_014768383.1	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   |*|||||*||||||||||||* targets:1454   UAGGCAACUCAUCCUUGGCUC   1474 Target Full Sequence	2.0	PREDICTED: Glycine max nuclear transcription factor Y subunit A-10-like (LOC100808195), transcript variant X1, mRNA	nuclear transcription factor Y subunit A-10-like(LOC100808195)	coding protein	psRNATarget
XM_006582802.2	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   |*||*|||||||||||||||* targets:1452   UAGGGAAGUCAUCCUUGGCUC   1472 Target Full Sequence	2.0	PREDICTED: Glycine max CCAAT-binding transcription factor family protein (NF-YA1), transcript variant X5, mRNA	CCAAT-binding transcription factor family protein(NF-YA1)	coding protein	psRNATarget
XM_006575219.2	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   |*|||||*||||||||||||* targets:1475   UAGGCAACUCAUCCUUGGCUC   1495 Target Full Sequence	2.0	PREDICTED: Glycine max nuclear transcription factor Y subunit A-10-like (LOC100808195), transcript variant X8, mRNA	nuclear transcription factor Y subunit A-10-like(LOC100808195)	coding protein	psRNATarget
XM_014763058.1	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   |*|||||*||||||||||||* targets:1483   UAGGCAACUCAUCCUUGGCUC   1503 Target Full Sequence	2.0	PREDICTED: Glycine max nuclear transcription factor Y subunit A-10-like (LOC100794755), transcript variant X6, mRNA	nuclear transcription factor Y subunit A-10-like(LOC100794755)	coding protein	psRNATarget
XM_006575221.2	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   |*|||||*||||||||||||* targets:1478   UAGGCAACUCAUCCUUGGCUC   1498 Target Full Sequence	2.0	PREDICTED: Glycine max nuclear transcription factor Y subunit A-10-like (LOC100808195), transcript variant X5, mRNA	nuclear transcription factor Y subunit A-10-like(LOC100808195)	coding protein	psRNATarget
XM_014768388.1	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   |*|||||*||||||||||||* targets:1481   UAGGCAACUCAUCCUUGGCUC   1501 Target Full Sequence	2.0	PREDICTED: Glycine max nuclear transcription factor Y subunit A-10-like (LOC100808195), transcript variant X4, mRNA	nuclear transcription factor Y subunit A-10-like(LOC100808195)	coding protein	psRNATarget
XM_014777322.1	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   |*||*|||||||||||||||* targets:1463   UAGGGAAGUCAUCCUUGGCUC   1483 Target Full Sequence	2.0	PREDICTED: Glycine max CCAAT-binding transcription factor family protein (NF-YA1), transcript variant X4, mRNA	CCAAT-binding transcription factor family protein(NF-YA1)	coding protein	psRNATarget
XM_014763053.1	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   |*|||||*||||||||||||* targets:1492   UAGGCAACUCAUCCUUGGCUC   1512 Target Full Sequence	2.0	PREDICTED: Glycine max nuclear transcription factor Y subunit A-10-like (LOC100794755), transcript variant X1, mRNA	nuclear transcription factor Y subunit A-10-like(LOC100794755)	coding protein	psRNATarget
XM_014768399.1	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   |*|||||*||||||||||||* targets:1490   UAGGCAACUCAUCCUUGGCUC   1510 Target Full Sequence	2.0	PREDICTED: Glycine max nuclear transcription factor Y subunit A-10-like (LOC100808195), transcript variant X10, mRNA	nuclear transcription factor Y subunit A-10-like(LOC100808195)	coding protein	psRNATarget
XM_006575218.2	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   |*|||||*||||||||||||* targets:1499   UAGGCAACUCAUCCUUGGCUC   1519 Target Full Sequence	2.0	PREDICTED: Glycine max nuclear transcription factor Y subunit A-10-like (LOC100808195), transcript variant X6, mRNA	nuclear transcription factor Y subunit A-10-like(LOC100808195)	coding protein	psRNATarget
XM_014768385.1	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   |*|||||*||||||||||||* targets:1505   UAGGCAACUCAUCCUUGGCUC   1525 Target Full Sequence	2.0	PREDICTED: Glycine max nuclear transcription factor Y subunit A-10-like (LOC100808195), transcript variant X2, mRNA	nuclear transcription factor Y subunit A-10-like(LOC100808195)	coding protein	psRNATarget
XM_014763056.1	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   |*|||||*||||||||||||* targets:1517   UAGGCAACUCAUCCUUGGCUC   1537 Target Full Sequence	2.0	PREDICTED: Glycine max nuclear transcription factor Y subunit A-10-like (LOC100794755), transcript variant X4, mRNA	nuclear transcription factor Y subunit A-10-like(LOC100794755)	coding protein	psRNATarget
XM_006575220.2	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   |*|||||*||||||||||||* targets:1516   UAGGCAACUCAUCCUUGGCUC   1536 Target Full Sequence	2.0	PREDICTED: Glycine max nuclear transcription factor Y subunit A-10-like (LOC100808195), transcript variant X3, mRNA	nuclear transcription factor Y subunit A-10-like(LOC100808195)	coding protein	psRNATarget
XM_014768393.1	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   |*|||||*||||||||||||* targets:1519   UAGGCAACUCAUCCUUGGCUC   1539 Target Full Sequence	2.0	PREDICTED: Glycine max nuclear transcription factor Y subunit A-10-like (LOC100808195), transcript variant X7, mRNA	nuclear transcription factor Y subunit A-10-like(LOC100808195)	coding protein	psRNATarget
XM_014763059.1	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   |*|||||*||||||||||||* targets:1544   UAGGCAACUCAUCCUUGGCUC   1564 Target Full Sequence	2.0	PREDICTED: Glycine max nuclear transcription factor Y subunit A-10-like (LOC100794755), transcript variant X7, mRNA	nuclear transcription factor Y subunit A-10-like(LOC100794755)	coding protein	psRNATarget
FJ775528.1	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   |*||*|||||||||||||||* targets:1345   UAGGGAAGUCAUCCUUGGCUC   1365 Target Full Sequence	2.0	Glycine max CCAAT-binding transcription factor family protein (NF-YA1) mRNA, complete cds	NA	coding protein	psRNATarget
NM_001248458.1	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   |*||*|||||||||||||||* targets:1345   UAGGGAAGUCAUCCUUGGCUC   1365 Target Full Sequence	2.0	Glycine max CCAAT-binding transcription factor family protein (NF-YA1), mRNA	CCAAT-binding transcription factor family protein(NF-YA1)	coding protein	psRNATarget
XM_014763054.1	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   |*|||||*||||||||||||* targets:1554   UAGGCAACUCAUCCUUGGCUC   1574 Target Full Sequence	2.0	PREDICTED: Glycine max nuclear transcription factor Y subunit A-10-like (LOC100794755), transcript variant X2, mRNA	nuclear transcription factor Y subunit A-10-like(LOC100794755)	coding protein	psRNATarget
XM_006582801.2	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   |*||*|||||||||||||||* targets:1530   UAGGGAAGUCAUCCUUGGCUC   1550 Target Full Sequence	2.0	PREDICTED: Glycine max CCAAT-binding transcription factor family protein (NF-YA1), transcript variant X3, mRNA	CCAAT-binding transcription factor family protein(NF-YA1)	coding protein	psRNATarget
XM_006582804.2	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   |*||*|||||||||||||||* targets:1536   UAGGGAAGUCAUCCUUGGCUC   1556 Target Full Sequence	2.0	PREDICTED: Glycine max CCAAT-binding transcription factor family protein (NF-YA1), transcript variant X7, mRNA	CCAAT-binding transcription factor family protein(NF-YA1)	coding protein	psRNATarget
XM_006582800.2	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   |*||*|||||||||||||||* targets:1541   UAGGGAAGUCAUCCUUGGCUC   1561 Target Full Sequence	2.0	PREDICTED: Glycine max CCAAT-binding transcription factor family protein (NF-YA1), transcript variant X2, mRNA	CCAAT-binding transcription factor family protein(NF-YA1)	coding protein	psRNATarget
XM_014763057.1	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   |*|||||*||||||||||||* targets:1578   UAGGCAACUCAUCCUUGGCUC   1598 Target Full Sequence	2.0	PREDICTED: Glycine max nuclear transcription factor Y subunit A-10-like (LOC100794755), transcript variant X5, mRNA	nuclear transcription factor Y subunit A-10-like(LOC100794755)	coding protein	psRNATarget
XM_014777323.1	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   |*||*|||||||||||||||* targets:1579   UAGGGAAGUCAUCCUUGGCUC   1599 Target Full Sequence	2.0	PREDICTED: Glycine max CCAAT-binding transcription factor family protein (NF-YA1), transcript variant X6, mRNA	CCAAT-binding transcription factor family protein(NF-YA1)	coding protein	psRNATarget
XM_006582799.2	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   |*||*|||||||||||||||* targets:1595   UAGGGAAGUCAUCCUUGGCUC   1615 Target Full Sequence	2.0	PREDICTED: Glycine max CCAAT-binding transcription factor family protein (NF-YA1), transcript variant X1, mRNA	CCAAT-binding transcription factor family protein(NF-YA1)	coding protein	psRNATarget
XM_003521452.3	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   **|||||*||||||||||||* targets:1458   AAGGCAACUCAUCCUUGGCUU   1478 Target Full Sequence	2.0	PREDICTED: Glycine max nuclear transcription factor Y subunit A-10 (LOC100527677), transcript variant X2, mRNA	nuclear transcription factor Y subunit A-10(LOC100527677)	coding protein	psRNATarget
XM_003521453.3	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   **|||||*||||||||||||* targets:1504   AAGGCAACUCAUCCUUGGCUU   1524 Target Full Sequence	2.0	PREDICTED: Glycine max nuclear transcription factor Y subunit A-10 (LOC100527677), transcript variant X1, mRNA	nuclear transcription factor Y subunit A-10(LOC100527677)	coding protein	psRNATarget
XM_014773924.1	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   **|||||*||||||||||||* targets:1523   AAGGCAACUCAUCCUUGGCUU   1543 Target Full Sequence	2.0	PREDICTED: Glycine max nuclear transcription factor Y subunit A-10 (LOC100527677), transcript variant X3, mRNA	nuclear transcription factor Y subunit A-10(LOC100527677)	coding protein	psRNATarget
LQ242614.1	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   |||||||||||||=||||||* targets:154   UCGGCAAGUCAUCUUUGGCUA   174 Target Full Sequence	2.5	Sequence 8609 from Patent EP2985353	NA	coding protein	psRNATarget
JB170945.1	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   |||||||||||||=||||||* targets:154   UCGGCAAGUCAUCUUUGGCUA   174 Target Full Sequence	2.5	Sequence 8609 from Patent EP2559767	NA	coding protein	psRNATarget
HI410484.1	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   |||||||||||||=||||||* targets:154   UCGGCAAGUCAUCUUUGGCUA   174 Target Full Sequence	2.5	Sequence 8609 from Patent EP2074227	NA	coding protein	psRNATarget
XM_014767062.1	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   *||||||*||||=|||||||| targets:1367   GCGGCAAAUCAUUCUUGGCUG   1387 Target Full Sequence	2.5	PREDICTED: Glycine max nuclear transcription factor Y subunit A-9 (LOC100815617), transcript variant X2, mRNA	nuclear transcription factor Y subunit A-9(LOC100815617)	coding protein	psRNATarget
XM_006575664.2	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   *||||||*||||=|||||||| targets:1349   GCGGCAAAUCAUUCUUGGCUG   1369 Target Full Sequence	2.5	PREDICTED: Glycine max nuclear transcription factor Y subunit A-9-like (LOC102664020), transcript variant X4, mRNA	nuclear transcription factor Y subunit A-9-like(LOC102664020)	coding protein	psRNATarget
AK244862.1	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   *||||||*||||=|||||||| targets:1438   GCGGCAAAUCAUUCUUGGCUG   1458 Target Full Sequence	2.5	Glycine max cDNA, clone: GMFL01-15-I08	NA	coding protein	psRNATarget
XM_006575660.2	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   *||||||*||||=|||||||| targets:1406   GCGGCAAAUCAUUCUUGGCUG   1426 Target Full Sequence	2.5	PREDICTED: Glycine max nuclear transcription factor Y subunit A-9-like (LOC102664020), transcript variant X1, mRNA	nuclear transcription factor Y subunit A-9-like(LOC102664020)	coding protein	psRNATarget
XM_006575663.2	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   *||||||*||||=|||||||| targets:1409   GCGGCAAAUCAUUCUUGGCUG   1429 Target Full Sequence	2.5	PREDICTED: Glycine max nuclear transcription factor Y subunit A-9-like (LOC102664020), transcript variant X3, mRNA	nuclear transcription factor Y subunit A-9-like(LOC102664020)	coding protein	psRNATarget
XM_003544477.3	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   *||||||*||||=|||||||| targets:1530   GCGGCAAAUCAUUCUUGGCUG   1550 Target Full Sequence	2.5	PREDICTED: Glycine max nuclear transcription factor Y subunit A-9 (LOC100815617), transcript variant X1, mRNA	nuclear transcription factor Y subunit A-9(LOC100815617)	coding protein	psRNATarget
XM_006575661.2	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   *||||||*||||=|||||||| targets:1490   GCGGCAAAUCAUUCUUGGCUG   1510 Target Full Sequence	2.5	PREDICTED: Glycine max nuclear transcription factor Y subunit A-9-like (LOC102664020), transcript variant X2, mRNA	nuclear transcription factor Y subunit A-9-like(LOC102664020)	coding protein	psRNATarget

Reference

1	PMID:18402695 "Novel and nodulation-regulated microRNAs in soybean roots"; Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O; BMC Genomics. 9:160(2008).