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BaseInfo

ncRNA ID	gma-miR1510b-3p
Species	Glycine max
Class	miRNA
Genome position	chr2:6599299-6599392 [+]
Reference genome	v1.0
Source	miRBase
Length	21
Mature sequence(if miRNA)	63 - UGUUGUUUUACCUAUUCCACC - 83
Stem-loop(if miRNA)	UUU      G   A                 U   -U      -  G    AUGGAA UGG GGGAUAGGUAAAACAAC ACU  CUGUAA AA U    |||||| ||| ||||||||||||||||| |||  |||||| ||    UACCUU ACC CCUUAUCCAUUUUGUUG UGA  GAUAUU UU A AUC      A   A                 U   UU      G  A
Stem-loop sequence	UUUAUGGAAGUGGAGGGAUAGGUAAAACAACUACUUCUGUAAAAGUAAUUGUUAUAGUUAGUUGUUGUUUUACCUAUUCCACCAAUUCCAUCUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_014767478.1	ncRNA:21   CCACCUUAUCCAUUUUGUUGU   1   |*|||||*||||||||||||| targets:925   GAUGGAACAGGUAAAACAACA   945 Target Full Sequence	1.0	PREDICTED: Glycine max disease resistance protein RML1A-like (LOC102665383), transcript variant X1, mRNA	disease resistance protein RML1A-like(LOC102665383)	coding protein	psRNATarget
XM_014767479.1	ncRNA:21   CCACCUUAUCCAUUUUGUUGU   1   |*|||||*||||||||||||| targets:925   GAUGGAACAGGUAAAACAACA   945 Target Full Sequence	1.0	PREDICTED: Glycine max disease resistance protein RML1A-like (LOC102665383), transcript variant X2, mRNA	disease resistance protein RML1A-like(LOC102665383)	coding protein	psRNATarget
XM_006603691.2	ncRNA:21   CCACCUUAUCCAUUUUGUUGU   1   ||||||=||||||||||=||| targets:315   GGUGGAGUAGGUAAAACGACA   335 Target Full Sequence	2.5	PREDICTED: Glycine max functional candidate resistance protein KR1 (KR1), transcript variant X1, mRNA	functional candidate resistance protein KR1(KR1)	coding protein	psRNATarget
XM_014768535.1	ncRNA:21   CCACCUUAUCCAUUUUGUUGU   1   ||||||=|=|||||||||||| targets:749   GGUGGAGUGGGUAAAACAACA   769 Target Full Sequence	2.5	PREDICTED: Glycine max TMV resistance protein N-like (LOC100817950), transcript variant X2, mRNA	TMV resistance protein N-like(LOC100817950)	coding protein	psRNATarget
XM_014768534.1	ncRNA:21   CCACCUUAUCCAUUUUGUUGU   1   ||||||=|=|||||||||||| targets:749   GGUGGAGUGGGUAAAACAACA   769 Target Full Sequence	2.5	PREDICTED: Glycine max TMV resistance protein N-like (LOC100817950), transcript variant X1, mRNA	TMV resistance protein N-like(LOC100817950)	coding protein	psRNATarget
AF327903.1	ncRNA:21   CCACCUUAUCCAUUUUGUUGU   1   ||||||=||||||||||=||| targets:778   GGUGGAGUAGGUAAAACGACA   798 Target Full Sequence	2.5	Glycine max functional candidate resistance protein KR1 (KR1) mRNA, complete cds	NA	coding protein	psRNATarget
NM_001250837.2	ncRNA:21   CCACCUUAUCCAUUUUGUUGU   1   ||||||=||||||||||=||| targets:778   GGUGGAGUAGGUAAAACGACA   798 Target Full Sequence	2.5	Glycine max resistance protein KR1 (KR1), mRNA	functional candidate resistance protein KR1(KR1)	coding protein	psRNATarget
XM_006603943.2	ncRNA:21   CCACCUUAUCCAUUUUGUUGU   1   ||||||=||||||||||*||| targets:224   GGUGGAGUAGGUAAAACCACA   244 Target Full Sequence	2.5	PREDICTED: Glycine max TMV resistance protein N-like (LOC100784366), transcript variant X3, mRNA	TMV resistance protein N-like(LOC100784366)	coding protein	psRNATarget
XM_006603941.2	ncRNA:21   CCACCUUAUCCAUUUUGUUGU   1   ||||||=||||||||||*||| targets:934   GGUGGAGUAGGUAAAACCACA   954 Target Full Sequence	2.5	PREDICTED: Glycine max TMV resistance protein N-like (LOC100784366), transcript variant X2, mRNA	TMV resistance protein N-like(LOC100784366)	coding protein	psRNATarget
XM_006603803.2	ncRNA:21   CCACCUUAUCCAUUUUGUUGU   1   |||||=|||||*||||||||| targets:795   GGUGGGAUAGGAAAAACAACA   815 Target Full Sequence	2.5	PREDICTED: Glycine max TMV resistance protein N-like (LOC100780257), mRNA	TMV resistance protein N-like(LOC100780257)	coding protein	psRNATarget
XM_006603940.2	ncRNA:21   CCACCUUAUCCAUUUUGUUGU   1   ||||||=||||||||||*||| targets:934   GGUGGAGUAGGUAAAACCACA   954 Target Full Sequence	2.5	PREDICTED: Glycine max TMV resistance protein N-like (LOC100784366), transcript variant X1, mRNA	TMV resistance protein N-like(LOC100784366)	coding protein	psRNATarget
XM_006599308.2	ncRNA:21   CCACCUUAUCCAUUUUGUUGU   1   **||||=|=|||||||||||| targets:776   CCUGGAGUGGGUAAAACAACA   796 Target Full Sequence	2.5	PREDICTED: Glycine max TMV resistance protein N-like (LOC100796826), mRNA	TMV resistance protein N-like(LOC100796826)	coding protein	psRNATarget
XM_006599393.2	ncRNA:21   CCACCUUAUCCAUUUUGUUGU   1   |||||*|||||||||||*||| targets:845   GGUGGUAUAGGUAAAACCACA   865 Target Full Sequence	2.5	PREDICTED: Glycine max TMV resistance protein N-like (LOC100805685), mRNA	TMV resistance protein N-like(LOC100805685)	coding protein	psRNATarget
XM_003542772.3	ncRNA:21   CCACCUUAUCCAUUUUGUUGU   1   **|||||||||*||||||||* targets:715   UCUGGAAUAGGCAAAACAACU   735 Target Full Sequence	2.5	PREDICTED: Glycine max TMV resistance protein N-like (LOC100775324), mRNA	TMV resistance protein N-like(LOC100775324)	coding protein	psRNATarget
JB170923.1	ncRNA:21   CCACCUUAUCCAUUUUGUUGU   1   ||*||=||||||||||||||= targets:10   GGAGGGAUAGGUAAAACAACG   30 Target Full Sequence	3.0	Sequence 8587 from Patent EP2559767	NA	coding protein	psRNATarget
HI410462.1	ncRNA:21   CCACCUUAUCCAUUUUGUUGU   1   ||*||=||||||||||||||= targets:10   GGAGGGAUAGGUAAAACAACG   30 Target Full Sequence	3.0	Sequence 8587 from Patent EP2074227	NA	coding protein	psRNATarget
LQ242592.1	ncRNA:21   CCACCUUAUCCAUUUUGUUGU   1   ||*||=||||||||||||||= targets:10   GGAGGGAUAGGUAAAACAACG   30 Target Full Sequence	3.0	Sequence 8587 from Patent EP2985353	NA	coding protein	psRNATarget
XM_014768292.1	ncRNA:21   CC-ACCUUAUCCAUUUUGUUGU   1   ||-|*||||||||||||||||| targets:998   GGCUAGAAUAGGUAAAACAACA   1019 Target Full Sequence	3.0	PREDICTED: Glycine max TMV resistance protein N-like (LOC102665522), transcript variant X8, mRNA	TMV resistance protein N-like(LOC102665522)	coding protein	psRNATarget
XM_014768289.1	ncRNA:21   CC-ACCUUAUCCAUUUUGUUGU   1   ||-|*||||||||||||||||| targets:998   GGCUAGAAUAGGUAAAACAACA   1019 Target Full Sequence	3.0	PREDICTED: Glycine max TMV resistance protein N-like (LOC102665522), transcript variant X5, mRNA	TMV resistance protein N-like(LOC102665522)	coding protein	psRNATarget
XM_014768288.1	ncRNA:21   CC-ACCUUAUCCAUUUUGUUGU   1   ||-|*||||||||||||||||| targets:998   GGCUAGAAUAGGUAAAACAACA   1019 Target Full Sequence	3.0	PREDICTED: Glycine max TMV resistance protein N-like (LOC102665522), transcript variant X4, mRNA	TMV resistance protein N-like(LOC102665522)	coding protein	psRNATarget
XM_014768286.1	ncRNA:21   CC-ACCUUAUCCAUUUUGUUGU   1   ||-|*||||||||||||||||| targets:998   GGCUAGAAUAGGUAAAACAACA   1019 Target Full Sequence	3.0	PREDICTED: Glycine max TMV resistance protein N-like (LOC102665522), transcript variant X2, mRNA	TMV resistance protein N-like(LOC102665522)	coding protein	psRNATarget
XM_014768287.1	ncRNA:21   CC-ACCUUAUCCAUUUUGUUGU   1   ||-|*||||||||||||||||| targets:998   GGCUAGAAUAGGUAAAACAACA   1019 Target Full Sequence	3.0	PREDICTED: Glycine max TMV resistance protein N-like (LOC102665522), transcript variant X3, mRNA	TMV resistance protein N-like(LOC102665522)	coding protein	psRNATarget
XM_014768291.1	ncRNA:21   CC-ACCUUAUCCAUUUUGUUGU   1   ||-|*||||||||||||||||| targets:998   GGCUAGAAUAGGUAAAACAACA   1019 Target Full Sequence	3.0	PREDICTED: Glycine max TMV resistance protein N-like (LOC102665522), transcript variant X7, mRNA	TMV resistance protein N-like(LOC102665522)	coding protein	psRNATarget
XM_014768290.1	ncRNA:21   CC-ACCUUAUCCAUUUUGUUGU   1   ||-|*||||||||||||||||| targets:998   GGCUAGAAUAGGUAAAACAACA   1019 Target Full Sequence	3.0	PREDICTED: Glycine max TMV resistance protein N-like (LOC102665522), transcript variant X6, mRNA	TMV resistance protein N-like(LOC102665522)	coding protein	psRNATarget
XM_014768293.1	ncRNA:21   CC-ACCUUAUCCAUUUUGUUGU   1   ||-|*||||||||||||||||| targets:994   GGCUAGAAUAGGUAAAACAACA   1015 Target Full Sequence	3.0	PREDICTED: Glycine max TMV resistance protein N-like (LOC102665522), transcript variant X9, mRNA	TMV resistance protein N-like(LOC102665522)	coding protein	psRNATarget
XM_014768285.1	ncRNA:21   CC-ACCUUAUCCAUUUUGUUGU   1   ||-|*||||||||||||||||| targets:998   GGCUAGAAUAGGUAAAACAACA   1019 Target Full Sequence	3.0	PREDICTED: Glycine max TMV resistance protein N-like (LOC102665522), transcript variant X1, mRNA	TMV resistance protein N-like(LOC102665522)	coding protein	psRNATarget
XM_014768055.1	ncRNA:21   CCACCUUAUCCAUUUUGUUGU   1   *|||||=*||||||||||||* targets:3737   AGUGGAGCAGGUAAAACAACU   3757 Target Full Sequence	3.0	PREDICTED: Glycine max pleiotropic drug resistance protein 1-like (LOC100784281), transcript variant X2, mRNA	pleiotropic drug resistance protein 1-like(LOC100784281)	coding protein	psRNATarget
XM_006597075.2	ncRNA:21   CCACCUUAUCCAUUUUGUUGU   1   *|||||=*||||||||||||* targets:3736   AGUGGAGCAGGUAAAACAACU   3756 Target Full Sequence	3.0	PREDICTED: Glycine max pleiotropic drug resistance protein 1-like (LOC100784281), transcript variant X1, mRNA	pleiotropic drug resistance protein 1-like(LOC100784281)	coding protein	psRNATarget

Reference

1	PMID:19084500 "Identification and expression analysis of miRNAs from nitrogen-fixing soybean nodules"; Wang Y, Li P, Cao X, Wang X, Zhang A, Li X; Biochem Biophys Res Commun. 378:799-803(2009).
2	PMID:21504877 "MicroRNAs in the shoot apical meristem of soybean"; Wong CE, Zhao YT, Wang XJ, Croft L, Wang ZH, Haerizadeh F, Mattick JS, Singh MB, Carroll BJ, Bhalla PL; J Exp Bot. 62:2495-2506(2011).
3	PMID:21663675 "Identification of novel soybean microRNAs involved in abiotic and biotic stresses"; Kulcheski FR, de Oliveira LF, Molina LG, Almerao MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimaraes FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R; BMC Genomics. 12:307(2011).
4	PMID:22156213 "MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs"; Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC; Genes Dev. 25:2540-2553(2011).