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BaseInfo

ncRNA ID gma-miR171j-3p
Species Glycine max
Class miRNA
Genome position chr2:4014001-4014153 [-]
Reference genome v1.0
Source miRBase
Length 21
Mature sequence(if miRNA) 16 - UGAUUGAGCCGUGCCAAUAUC - 36
Stem-loop(if miRNA)           U    U         C       C      AUGUAU       -    -GU     CC   --C    A
AUGAAGUAGU AUUG GAUAUUGGC UGGUUCA UCAGAC      ACCACGG CACG   UGUGU  UUG   UAGA A
|||||||||| |||| ||||||||| ||||||| ||||||      ||||||| ||||   |||||  |||   ||||
UACUUUAUCG UGAC CUAUAACCG GCCGAGU AGUUUG      UGGUGUU GUGU   ACAUA  AAC   AUUU G
          -    U         U       U      -GGUUU       A    UGU     -A   AAA    A
Stem-loop sequence AUGAAGUAGUUAUUGUGAUAUUGGCCUGGUUCACUCAGACAUGUAUACCACGGCACGGUUGUGUCCUUGCUAGAAAGAUUUAAAACAAAAUACAUGUUGUGAUUGUGGUUUUGGGUUUGAUUGAGCCGUGCCAAUAUCUCAGUGCUAUUUCAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014773107.1
ncRNA:21   CUAUAACCGUGCCGAGUUAGU   1
  |||||||||=|||||||||||
targets:1516   GAUAUUGGCGCGGCUCAAUCA   1536

1.5 PREDICTED: Glycine max scarecrow-like protein 6 (LOC100805945), mRNA scarecrow-like protein 6(LOC100805945) coding protein psRNATarget
XM_006573169.2
ncRNA:21   CUAUAACCGUGCCGAGUUAGU   1
  |||||||||=|||||||||||
targets:1754   GAUAUUGGCGCGGCUCAAUCA   1774

1.5 PREDICTED: Glycine max scarecrow-like protein 27 (LOC100792973), mRNA scarecrow-like protein 27(LOC100792973) coding protein psRNATarget
XM_006576371.2
ncRNA:21   CUAUAACCGUGCCGAGUUAGU   1
  |||||||||=|||||||||||
targets:1633   GAUAUUGGCGCGGCUCAAUCA   1653

1.5 PREDICTED: Glycine max scarecrow-like protein 6 (LOC100794596), mRNA scarecrow-like protein 6(LOC100794596) coding protein psRNATarget
XM_003516392.3
ncRNA:21   CUAUAACCGUGCCGAGUUAGU   1
  |||||||||=|||||||||||
targets:1783   GAUAUUGGCGCGGCUCAAUCA   1803

1.5 PREDICTED: Glycine max scarecrow-like protein 6 (LOC100801785), mRNA scarecrow-like protein 6(LOC100801785) coding protein psRNATarget
XM_014763627.1
ncRNA:21   CUAUAACCGUGCCGAGUUAGU   1
  *|**|||*|||||||||||||
targets:281   CACUUUGCCACGGCUCAAUCA   301

3.0 PREDICTED: Glycine max cysteine-rich repeat secretory protein 55-like (LOC106795088), mRNA cysteine-rich repeat secretory protein 55-like(LOC106795088) coding protein psRNATarget
XM_006591692.1
ncRNA:21   CUAUAACCGUGCCGAGUUAGU   1
  *|**|||*|||||||||||||
targets:202   CACUUUGCCACGGCUCAAUCA   222

3.0 PREDICTED: Glycine max cysteine-rich receptor-like protein kinase 2 (LOC100816244), mRNA cysteine-rich receptor-like protein kinase 2(LOC100816244) coding protein psRNATarget
XM_006591698.1
ncRNA:21   CUAUAACCGUGCCGAGUUAGU   1
  *|**|||*|||||||||||||
targets:202   CACUUUGCCACGGCUCAAUCA   222

3.0 PREDICTED: Glycine max cysteine-rich receptor-like protein kinase 2 (LOC100776689), mRNA cysteine-rich receptor-like protein kinase 2(LOC100776689) coding protein psRNATarget
XM_014764184.1
ncRNA:21   CUAUAACCGUGCCGAGUUAGU   1
  *|**|||*|||||||||||||
targets:302   CACUUUGCCACGGCUCAAUCA   322

3.0 PREDICTED: Glycine max cysteine-rich receptor-like protein kinase 2 (LOC100784716), transcript variant X2, mRNA cysteine-rich receptor-like protein kinase 2(LOC100784716) coding protein psRNATarget
XM_014764181.1
ncRNA:21   CUAUAACCGUGCCGAGUUAGU   1
  *|**|||*|||||||||||||
targets:299   CACUUUGUCACGGCUCAAUCA   319

3.0 PREDICTED: Glycine max cysteine-rich receptor-like protein kinase 2 (LOC100816764), mRNA cysteine-rich receptor-like protein kinase 2(LOC100816764) coding protein psRNATarget
XM_003537359.3
ncRNA:21   CUAUAACCGUGCCGAGUUAGU   1
  *|**|||*|||||||||||||
targets:301   CACUUUGCCACGGCUCAAUCA   321

3.0 PREDICTED: Glycine max cysteine-rich receptor-like protein kinase 2 (LOC100784716), transcript variant X3, mRNA cysteine-rich receptor-like protein kinase 2(LOC100784716) coding protein psRNATarget
XM_006591224.2
ncRNA:21   CUAUAACCGUGCCGAGUUAGU   1
  *|**|||*|||||||||||||
targets:302   CACUUUGCCACGGCUCAAUCA   322

3.0 PREDICTED: Glycine max cysteine-rich receptor-like protein kinase 2 (LOC100784716), transcript variant X1, mRNA cysteine-rich receptor-like protein kinase 2(LOC100784716) coding protein psRNATarget

Reference

1 PMID:21663675
"Identification of novel soybean microRNAs involved in abiotic and biotic stresses";
Kulcheski FR, de Oliveira LF, Molina LG, Almerao MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimaraes FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R;
BMC Genomics. 12:307(2011).
2 PMID:22156213
"MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs";
Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC;
Genes Dev. 25:2540-2553(2011).
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