| ncRNA ID | gma-miR171j-5p |
| Species | Glycine max |
| Class | miRNA |
| Genome position | chr2:4014001-4014153 [-] |
| Reference genome | v1.0 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 115 - UAUUGGCCUGGUUCACUCAGA - 135 |
| Stem-loop(if miRNA) |
U U C C AUGUAU - -GU CC --C A AUGAAGUAGU AUUG GAUAUUGGC UGGUUCA UCAGAC ACCACGG CACG UGUGU UUG UAGA A |||||||||| |||| ||||||||| ||||||| |||||| ||||||| |||| ||||| ||| |||| UACUUUAUCG UGAC CUAUAACCG GCCGAGU AGUUUG UGGUGUU GUGU ACAUA AAC AUUU G - U U U -GGUUU A UGU -A AAA A |
| Stem-loop sequence | AUGAAGUAGUUAUUGUGAUAUUGGCCUGGUUCACUCAGACAUGUAUACCACGGCACGGUUGUGUCCUUGCUAGAAAGAUUUAAAACAAAAUACAUGUUGUGAUUGUGGUUUUGGGUUUGAUUGAGCCGUGCCAAUAUCUCAGUGCUAUUUCAU |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| XM_006581034.2 |
|
3.0 | PREDICTED: Glycine max exportin-7-B-like (LOC100803866), transcript variant X7, mRNA | exportin-7-B-like(LOC100803866) | coding protein | psRNATarget | |||||||||
| XM_003527550.3 |
|
3.0 | PREDICTED: Glycine max exportin-7-B-like (LOC100803866), transcript variant X6, mRNA | exportin-7-B-like(LOC100803866) | coding protein | psRNATarget | |||||||||
| XM_006581032.2 |
|
3.0 | PREDICTED: Glycine max exportin-7-B-like (LOC100803866), transcript variant X5, mRNA | exportin-7-B-like(LOC100803866) | coding protein | psRNATarget | |||||||||
| XM_014777176.1 |
|
3.0 | PREDICTED: Glycine max exportin-7-B-like (LOC100803866), transcript variant X4, mRNA | exportin-7-B-like(LOC100803866) | coding protein | psRNATarget | |||||||||
| XM_014777175.1 |
|
3.0 | PREDICTED: Glycine max exportin-7-B-like (LOC100803866), transcript variant X3, mRNA | exportin-7-B-like(LOC100803866) | coding protein | psRNATarget | |||||||||
| XM_014777174.1 |
|
3.0 | PREDICTED: Glycine max exportin-7-B-like (LOC100803866), transcript variant X1, mRNA | exportin-7-B-like(LOC100803866) | coding protein | psRNATarget |
| 1 | PMID:21663675
"Identification of novel soybean microRNAs involved in abiotic and biotic stresses"; Kulcheski FR, de Oliveira LF, Molina LG, Almerao MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimaraes FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R; BMC Genomics. 12:307(2011). |
| 2 | PMID:22156213
"MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs"; Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC; Genes Dev. 25:2540-2553(2011). |