Search result

BaseInfo

ncRNA ID	gma-miR395l
Species	Glycine max
Class	miRNA
Genome position	chr2:1736326-1736459 [+]
Reference genome	v1.0
Source	miRBase
Length	21
Mature sequence(if miRNA)	102 - AUGAAGUGUUUGGGGGAACUC - 122
Stem-loop(if miRNA)	UUUUCU     CUGU   UU          UG           UUAGU     -----------     G     G A       GUUGG    CCU  GGAGUUCCUC  AACGCUUCAUG     GAGGG           GGGUA CCAGU U A       |||||    |||  ||||||||||  |||||||||||     |||||           ||||| ||||| | A       CAACU    GGG  UCUCAAGGGG  UUGUGAAGUAU     CUUCC           CCCAU GGUCA G C -----U     ---U   -U          GU           ----U     GAAUAUUAUUA     -     G U
Stem-loop sequence	UUUUCUGUUGGCUGUCCUUUGGAGUUCCUCUGAACGCUUCAUGUUAGUGAGGGGGGUAGCCAGUGUAAACUGGACUGGUACCCAUUAUUAUAAGCCUUCUUAUGAAGUGUUUGGGGGAACUCUUGGGUUCAACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_003531315.2	ncRNA:21   CUCAAGGGGGUUUGUGAAGUA   1   ||||||=|||||||||||||* targets:145   GAGUUCUCCCAAACACUUCAA   165 Target Full Sequence	2.0	PREDICTED: Glycine max sulfate transporter 2.1-like (LOC100775538), mRNA	sulfate transporter 2.1-like(LOC100775538)	coding protein	psRNATarget
XM_014770651.1	ncRNA:21   CUCAAGGGGGUUUGUGAAGUA   1   *|||||=|||||||||||||* targets:215   AAGUUCUCCCAAACACUUCAA   235 Target Full Sequence	2.0	PREDICTED: Glycine max sulfate transporter 2.1-like (LOC100814993), mRNA	sulfate transporter 2.1-like(LOC100814993)	coding protein	psRNATarget
XM_003552772.3	ncRNA:21   CUCAAGGGGGUUUGUGAAGUA   1   *|||||=|||||||||||||* targets:108   AAGUUCUCCCAAACACUUCAA   128 Target Full Sequence	2.0	PREDICTED: Glycine max sulfate transporter 2.1-like (LOC100817831), mRNA	sulfate transporter 2.1-like(LOC100817831)	coding protein	psRNATarget
XM_003538469.3	ncRNA:21   CUCAAGGGGGUUUGUGAAGUA   1   *|||||=|||||||||||||* targets:148   AAGUUCUCCCAAACACUUCAA   168 Target Full Sequence	2.0	PREDICTED: Glycine max sulfate transporter 2.1-like (LOC100781327), mRNA	sulfate transporter 2.1-like(LOC100781327)	coding protein	psRNATarget
XM_014767214.1	ncRNA:21   CUCAAGGGGGUUUGUGAAGUA   1   *|||||*|||||||||||||* targets:515   AAGUUCACCCAAACACUUCAA   535 Target Full Sequence	2.0	PREDICTED: Glycine max low affinity sulfate transporter 3-like (LOC100776591), transcript variant X3, mRNA	low affinity sulfate transporter 3-like(LOC100776591)	coding protein	psRNATarget
XM_006596268.2	ncRNA:21   CUCAAGGGGGUUUGUGAAGUA   1   *|||||*|||||||||||||* targets:516   AAGUUCACCCAAACACUUCAA   536 Target Full Sequence	2.0	PREDICTED: Glycine max low affinity sulfate transporter 3-like (LOC100776591), transcript variant X2, mRNA	low affinity sulfate transporter 3-like(LOC100776591)	coding protein	psRNATarget
XM_003543724.3	ncRNA:21   CUCAAGGGGGUUUGUGAAGUA   1   *|||||*|||||||||||||* targets:330   AAGUUCACCCAAACACUUCAG   350 Target Full Sequence	2.0	PREDICTED: Glycine max low affinity sulfate transporter 3-like (LOC100798723), mRNA	low affinity sulfate transporter 3-like(LOC100798723)	coding protein	psRNATarget
XM_006596269.2	ncRNA:21   CUCAAGGGGGUUUGUGAAGUA   1   *|||||*|||||||||||||* targets:519   AAGUUCACCCAAACACUUCAA   539 Target Full Sequence	2.0	PREDICTED: Glycine max low affinity sulfate transporter 3-like (LOC100776591), transcript variant X4, mRNA	low affinity sulfate transporter 3-like(LOC100776591)	coding protein	psRNATarget
XM_003544137.3	ncRNA:21   CUCAAGGGGGUUUGUGAAGUA   1   *|||||*|||||||||||||* targets:507   AAGUUCACCCAAACACUUCAA   527 Target Full Sequence	2.0	PREDICTED: Glycine max low affinity sulfate transporter 3-like (LOC100776591), transcript variant X1, mRNA	low affinity sulfate transporter 3-like(LOC100776591)	coding protein	psRNATarget
NM_001248739.2	ncRNA:21   CUCAAGGGGGUUUGUGAAGUA   1   |||||||=||||||=|||||| targets:332   GAGUUCCUCCAAACGCUUCAU   352 Target Full Sequence	2.5	Glycine max ATP sulfurylase (LOC547634), mRNA	ATP sulfurylase(LOC547634)	coding protein	psRNATarget
AF452454.2	ncRNA:21   CUCAAGGGGGUUUGUGAAGUA   1   |||||||=||||||=|||||| targets:337   GAGUUCCUCCAAACGCUUCAU   357 Target Full Sequence	2.5	Glycine max ATP sulfurylase mRNA, complete cds	NA	coding protein	psRNATarget
AK245851.1	ncRNA:21   CUCAAGGGGGUUUGUGAAGUA   1   |||||||=||||||=|||||| targets:494   GAGUUCCUCCAAACGCUUCAU   514 Target Full Sequence	2.5	Glycine max cDNA, clone: GMFL01-43-F21	NA	coding protein	psRNATarget
AK287070.1	ncRNA:21   CUCAAGGGGGUUUGUGAAGUA   1   |||||||=||||||=|||||| targets:507   GAGUUCCUCCAAACGCUUCAU   527 Target Full Sequence	2.5	Glycine max cDNA, clone: GMFL01-43-G19	NA	coding protein	psRNATarget
XM_003556023.3	ncRNA:21   CUCAAGGGGGUUUGUGAAGUA   1   |||||||=||||||=|||||| targets:506   GAGUUCCUCCAAACGCUUCAU   526 Target Full Sequence	2.5	PREDICTED: Glycine max ATP sulfurylase 1, chloroplastic (LOC100817530), mRNA	ATP sulfurylase 1, chloroplastic(LOC100817530)	coding protein	psRNATarget
XM_003526548.3	ncRNA:21   CUCAAGGGGGUUUGUGAAGUA   1   ||||||**||||||||||||* targets:259   GAGUUCAACCAAACACUUCAA   279 Target Full Sequence	3.0	PREDICTED: Glycine max low affinity sulfate transporter 3-like (LOC100805269), mRNA	low affinity sulfate transporter 3-like(LOC100805269)	coding protein	psRNATarget

Reference

1	PMID:22559273 "Genome organization and characteristics of soybean microRNAs"; Turner M, Yu O, Subramanian S; BMC Genomics. 13:169(2012).