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BaseInfo

ncRNA ID gma-miR408a-5p
Species Glycine max
Class miRNA
Genome position chr2:837416-837548 [+]
Reference genome v1.0
Source miRBase
Length 21
Mature sequence(if miRNA) 15 - CAGGGGAACAGGCAGAGCAUG - 35
Stem-loop(if miRNA)        GACAA   A      C      A     GA        U     CAA AUUGUCAAGAAACU
GAGACAG     AGC GGGGAA AGGCAG GCAUG  UGGAGCUA CAACA   U              G
|||||||     ||| |||||| |||||| |||||  |||||||| |||||   |              A
CUCUGUC     UCG UCCCUU UCCGUC CGUAC  GUCUUGGU GUUGU   U              G
       -----   G      C      A     UC        -     --A AAAGAGGAGAGUGA
Stem-loop sequence GAGACAGGACAAAGCAGGGGAACAGGCAGAGCAUGGAUGGAGCUAUCAACACAAUAUUGUCAAGAAACUGAGAGUGAGAGGAGAAAUAUGUUGUGGUUCUGCUCAUGCACUGCCUCUUCCCUGGCUCUGUCUC

Reference

1 PMID:21663675
"Identification of novel soybean microRNAs involved in abiotic and biotic stresses";
Kulcheski FR, de Oliveira LF, Molina LG, Almerao MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimaraes FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R;
BMC Genomics. 12:307(2011).
2 PMID:22156213
"MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs";
Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC;
Genes Dev. 25:2540-2553(2011).