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BaseInfo

ncRNA ID gma-miR9745
Species Glycine max
Class miRNA
Genome position chr19:49543831-49543980 [+]
Reference genome v1.0
Source miRBase
Length 24
Mature sequence(if miRNA) 8 - AGAAUUAAAUUUGGACCGUAUAAC - 31
Stem-loop(if miRNA)       G GA                               G             CG   AAAAGUCACAUGAC
GAGUGA A  AUUAAAUUUGGACCGUAUAACCAAACAUGGA GGUUAAGAUUUAA  UUA              U
|||||| |  ||||||||||||||||||||||||||||||| |||||||||||||  |||              U
CUCAUU U  UAAUUUAGACCUGGCAUAUUGGUUUGUACUU CUAGUUCUAAAUU  CAG              U
      G UC                               G             -A   UACAUUGGUGAAUU
Stem-loop sequence GAGUGAGAGAAUUAAAUUUGGACCGUAUAACCAAACAUGGAGGGUUAAGAUUUAACGUUAAAAAGUCACAUGACUUUUUAAGUGGUUACAUGACAUUAAAUCUUGAUCGUUCAUGUUUGGUUAUACGGUCCAGAUUUAAUCUUGUUACUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014778197.1
ncRNA:24   CAAUAUGCCAGGUUUAAAUUAAGA   1
  *|||||**||=|||||||||||||
targets:3593   CUUAUAAAGUUCAAAUUUAAUUCU   3616

3.0 PREDICTED: Glycine max uncharacterized LOC100782481 (LOC100782481), transcript variant X3, mRNA uncharacterized LOC100782481(LOC100782481) coding protein psRNATarget
XM_006583910.2
ncRNA:24   CAAUAUGCCAGGUUUAAAUUAAGA   1
  *|||||**||=|||||||||||||
targets:4145   CUUAUAAAGUUCAAAUUUAAUUCU   4168

3.0 PREDICTED: Glycine max uncharacterized LOC100782481 (LOC100782481), transcript variant X1, mRNA uncharacterized LOC100782481(LOC100782481) coding protein psRNATarget
XM_014778196.1
ncRNA:24   CAAUAUGCCAGGUUUAAAUUAAGA   1
  *|||||**||=|||||||||||||
targets:4155   CUUAUAAAGUUCAAAUUUAAUUCU   4178

3.0 PREDICTED: Glycine max uncharacterized LOC100782481 (LOC100782481), transcript variant X2, mRNA uncharacterized LOC100782481(LOC100782481) coding protein psRNATarget

Reference

1 PMID:24475082
"Systems and evolutionary characterization of microRNAs and their underlying regulatory networks in soybean cotyledons";
Goettel W, Liu Z, Xia J, Zhang W, Zhao PX, An YQ;
PLoS One. 9:e86153(2014).