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BaseInfo

ncRNA ID	gma-miR408d
Species	Glycine max
Class	miRNA
Genome position	chr19:47163685-47163814 [-]
Reference genome	v1.0
Source	miRBase
Length	20
Mature sequence(if miRNA)	10 - UGCACUGCCUCUUCCCUGGC - 29
Stem-loop(if miRNA)	-----A  -   -     C      A   C  A  G    AUC      AAAUGGAGAAGUGAGAAAU       AG GCU GGGAA AGGCAG GCA GA UG AGCU   AACAGA                   G       || ||| ||||| |||||| ||| || || ||||   ||||||       UC CGG CCCUU UCCGUC CGU CU GC UCGG   UUGUCU                   A UCUCUG  U   U     C      A   A  C  A    -GA      AGAGAGAGAAAGAGAGGAG
Stem-loop sequence	AAGGCUGGGAACAGGCAGAGCACGAAUGGAGCUAUCAACAGAAAAUGGAGAAGUGAGAAAUGAGAGGAGAGAAAGAGAGAGAUCUGUUAGGGCUACGCUCAUGCACUGCCUCUUCCCUGGCUCUGUCUCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT089263.1	ncRNA:20   CGGUCCCUUCUCCGUCACGU   1   *=|||||||||||||||||| targets:53   CUCAGGGAAGAGGCAGUGCA   72 Target Full Sequence	1.0	Soybean clone JCVI-FLGm-1D15 unknown mRNA	NA	coding protein	psRNATarget
NM_001250602.1	ncRNA:20   CGGUCCCUUCUCCGUCACGU   1   *=|||||||||||||||||| targets:53   CUCAGGGAAGAGGCAGUGCA   72 Target Full Sequence	1.0	Glycine max uncharacterized LOC100305588 (LOC100305588), mRNA	uncharacterized LOC100305588(LOC100305588)	coding protein	psRNATarget
XM_003528984.3	ncRNA:20   CGGUCCCUUCUCCGUCACGU   1   ||=||||||||||||||||* targets:841   GCUAGGGAAGAGGCAGUGCU   860 Target Full Sequence	2.0	PREDICTED: Glycine max uclacyanin-3-like (LOC100803164), mRNA	uclacyanin-3-like(LOC100803164)	coding protein	psRNATarget
XM_003521015.3	ncRNA:20   CGGUCCCUUCUCCGUCACGU   1   ||=||||||||||||||||* targets:695   GCUAGGGAAGAGGCAGUGCU   714 Target Full Sequence	2.0	PREDICTED: Glycine max uclacyanin-3 (LOC100789844), mRNA	uclacyanin-3(LOC100789844)	coding protein	psRNATarget
BT092919.1	ncRNA:20   CGGUCCCUUCUCCGUCACGU   1   ||=||||||||||||||||* targets:657   GCUAGGGAAGAGGCAGUGCU   676 Target Full Sequence	2.0	Soybean clone JCVI-FLGm-12F2 unknown mRNA	NA	coding protein	psRNATarget
XM_003518277.3	ncRNA:20   CGGUCCCUUCUCCGUCACGU   1   |||||*||||||||*||||| targets:158   GCCAGUGAAGAGGCUGUGCA   177 Target Full Sequence	2.5	PREDICTED: Glycine max laccase-3-like (LOC100815672), mRNA	laccase-3-like(LOC100815672)	coding protein	psRNATarget
XM_003519370.3	ncRNA:20   CGGUCCCUUCUCCGUCACGU   1   |||||*||||||||*||||| targets:223   GCCAGUGAAGAGGCUGUGCA   242 Target Full Sequence	2.5	PREDICTED: Glycine max laccase-5-like (LOC100797749), mRNA	laccase-5-like(LOC100797749)	coding protein	psRNATarget
XM_003543997.3	ncRNA:20   CGGUCCCUUCUCCGUCACGU   1   |||||*||||||||*||||| targets:193   GCCAGUGAAGAGGCUGUGCA   212 Target Full Sequence	2.5	PREDICTED: Glycine max laccase-5-like (LOC100796956), mRNA	laccase-5-like(LOC100796956)	coding protein	psRNATarget
XM_006596380.2	ncRNA:20   CGGUCCCUUCUCCGUCACGU   1   |||||*||||||||*||||| targets:140   GCCAGUGAAGAGGCUGUGCA   159 Target Full Sequence	2.5	PREDICTED: Glycine max laccase-3-like (LOC100786719), mRNA	laccase-3-like(LOC100786719)	coding protein	psRNATarget
XM_006574075.2	ncRNA:20   CGGUCCCUUCUCCGUCACGU   1   |||||*||||||||||*||| targets:485   GCCAGUGAAGAGGCAGGGCA   504 Target Full Sequence	2.5	PREDICTED: Glycine max ankyrin-1-like (LOC102663619), mRNA	ankyrin-1-like(LOC102663619)	coding protein	psRNATarget
XM_003538437.3	ncRNA:20   CGGUCCCUUCUCCGUCACGU   1   *||||*||||||||*||||| targets:197   UCCAGUGAAGAGGCUGUGCA   216 Target Full Sequence	2.5	PREDICTED: Glycine max laccase-12-like (LOC100808948), mRNA	laccase-12-like(LOC100808948)	coding protein	psRNATarget
NM_001249687.2	ncRNA:20   CGGUCCCUUCUCCGUCACGU   1   *||||*||||||||*||||| targets:182   UCCAGUGAAGAGGCUGUGCA   201 Target Full Sequence	2.5	Glycine max diphenol oxidase laccase (LOC547704), mRNA	diphenol oxidase laccase(LOC547704)	coding protein	psRNATarget
AY113187.2	ncRNA:20   CGGUCCCUUCUCCGUCACGU   1   *||||*||||||||*||||| targets:138   UCCAGUGAAGAGGCUGUGCA   157 Target Full Sequence	2.5	Glycine max diphenol oxidase laccase mRNA, complete cds	NA	coding protein	psRNATarget
BT089803.1	ncRNA:20   CG-GUCCCUUCUCCGUCACGU   1   ||-|*|||||||||||||||| targets:69   GCUCUGGGAAGAGGCAGUGCA   89 Target Full Sequence	3.0	Soybean clone JCVI-FLGm-2J20 unknown mRNA	NA	coding protein	psRNATarget
NM_001248446.2	ncRNA:20   CG-GUCCCUUCUCCGUCACGU   1   ||-|*|||||||||||||||| targets:67   GCUCUGGGAAGAGGCAGUGCA   87 Target Full Sequence	3.0	Glycine max uncharacterized LOC100305948 (LOC100305948), mRNA	uncharacterized LOC100305948(LOC100305948)	coding protein	psRNATarget
AK285555.1	ncRNA:20   CG-GUCCCUUCUCCGUCACGU   1   ||-|*|||||||||||||||| targets:33   GCUCUGGGAAGAGGCAGUGCA   53 Target Full Sequence	3.0	Glycine max cDNA, clone: GMFL01-12-G06	NA	coding protein	psRNATarget
BT089903.1	ncRNA:20   CG-GUCCCUUCUCCGUCACGU   1   ||-|*|||||||||||||||| targets:13   GCUCUGGGAAGAGGCAGUGCA   33 Target Full Sequence	3.0	Soybean clone JCVI-FLGm-3I19 unknown mRNA	NA	coding protein	psRNATarget
NM_001250241.2	ncRNA:20   CG-GUCCCUUCUCCGUCACGU   1   ||-|*|||||||||||||||| targets:13   GCUCUGGGAAGAGGCAGUGCA   33 Target Full Sequence	3.0	Glycine max uncharacterized LOC100499869 (LOC100499869), mRNA	uncharacterized LOC100499869(LOC100499869)	coding protein	psRNATarget

Reference

1	PMID:21504877 "MicroRNAs in the shoot apical meristem of soybean"; Wong CE, Zhao YT, Wang XJ, Croft L, Wang ZH, Haerizadeh F, Mattick JS, Singh MB, Carroll BJ, Bhalla PL; J Exp Bot. 62:2495-2506(2011).
2	PMID:22156213 "MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs"; Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC; Genes Dev. 25:2540-2553(2011).