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BaseInfo

ncRNA ID	gma-miR1535a
Species	Glycine max
Class	miRNA
Genome position	chr19:43786813-43786908 [+]
Reference genome	v1.0
Source	miRBase
Length	19
Mature sequence(if miRNA)	68 - CUUGUUUGUGGUGAUGUCU - 86
Stem-loop(if miRNA)	UAA    C                     -     AAAGAA   AGAGUG    GAGG CUAGACAUCACCACAAACAAG UCACC      GGA      U    |||| ||||||||||||||||||||| |||||      |||    UUCC GAUCUGUAGUGGUGUUUGUUC AGUGG      CCU      C UCC    A                     U     -----G   AAGACA
Stem-loop sequence	UAAGAGGCCUAGACAUCACCACAAACAAGUCACCAAAGAAGGAAGAGUGUCACAGAAUCCGGGUGAUCUUGUUUGUGGUGAUGUCUAGACCUUCCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_003528622.3	ncRNA:19   UCUGUAGUGGUGUUUGUUC   1   |*||||||||||||||||* targets:664   AAACAUCACCACAAACAAA   682 Target Full Sequence	2.0	PREDICTED: Glycine max adenylate isopentenyltransferase 5, chloroplastic-like (LOC100782474), mRNA	adenylate isopentenyltransferase 5, chloroplastic-like(LOC100782474)	coding protein	psRNATarget
XM_003551801.3	ncRNA:19   UCUGUAGUGGUGUUUGUUC   1   =|||||||=|||||||||| targets:266   GGACAUCAUCACAAACAAG   284 Target Full Sequence	2.5	PREDICTED: Glycine max adenylate isopentenyltransferase 5, chloroplastic-like (LOC100817288), mRNA	adenylate isopentenyltransferase 5, chloroplastic-like(LOC100817288)	coding protein	psRNATarget
XM_003550461.3	ncRNA:19   UCUGUAGUGGUGUUUGUUC   1   ||||||||||||=|||||* targets:553   AGACAUCACCACGAACAAA   571 Target Full Sequence	2.5	PREDICTED: Glycine max adenylate isopentenyltransferase 5, chloroplastic (LOC100778430), mRNA	adenylate isopentenyltransferase 5, chloroplastic(LOC100778430)	coding protein	psRNATarget
XM_003536632.3	ncRNA:19   UCUGUAGUGGUGUUUGUUC   1   *|||||||||||*|||||| targets:659   CGACAUCACCACCAACAAG   677 Target Full Sequence	2.5	PREDICTED: Glycine max adenylate isopentenyltransferase (LOC100813761), mRNA	adenylate isopentenyltransferase(LOC100813761)	coding protein	psRNATarget
XM_014772536.1	ncRNA:19   UCUGUAGUGGUGUUUGUUC   1   *|||||||||||*|||||| targets:650   CGACAUCACCACCAACAAG   668 Target Full Sequence	2.5	PREDICTED: Glycine max adenylate isopentenyltransferase-like (LOC100779563), mRNA	adenylate isopentenyltransferase-like(LOC100779563)	coding protein	psRNATarget
XM_006573436.2	ncRNA:19   UCUGUAGUGGUGUUUGUUC   1   |*||||||||||||*|||| targets:681   ACACAUCACCACAAUCAAG   699 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC102659456 (LOC102659456), mRNA	uncharacterized LOC102659456(LOC102659456)	coding protein	psRNATarget
XM_014774487.1	ncRNA:19   UCUGUAGUGGUGUUUGUUC   1   |*||||||||||||*|||| targets:688   ACACAUCACCACAAUCAAG   706 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC102665376 (LOC102665376), mRNA	uncharacterized LOC102665376(LOC102665376)	coding protein	psRNATarget
XM_006573263.2	ncRNA:19   UCUGUAGUGGUGUUUGUUC   1   |*||||||||||||*|||| targets:675   ACACAUCACCACAAUCAAG   693 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC102667180 (LOC102667180), mRNA	uncharacterized LOC102667180(LOC102667180)	coding protein	psRNATarget
XM_014774430.1	ncRNA:19   UCUGUAGUGGUGUUUGUUC   1   |*||||||||||||*|||| targets:680   ACACAUCACCACAAUCAAG   698 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC102667317 (LOC102667317), mRNA	uncharacterized LOC102667317(LOC102667317)	coding protein	psRNATarget

Reference

1	PMID:18402695 "Novel and nodulation-regulated microRNAs in soybean roots"; Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O; BMC Genomics. 9:160(2008).