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BaseInfo

ncRNA ID gma-miR156g
Species Glycine max
Class miRNA
Genome position chr19:8895389-8895506 [-]
Reference genome v1.0
Source miRBase
Length 20
Mature sequence(if miRNA) 73 - ACAGAAGAUAGAGAGCACAG - 92
Stem-loop(if miRNA) UGAACAAUAUCU   AC   U                          --  A      C     A
            UGA  AGU UGUUGACAGAAGAUAGAGAGCACAGG  UG UCAUAC CAAAA A
            |||  ||| ||||||||||||||||||||||||||  || |||||| |||||
            ACU  UCA GUAACUGUCUUCUAUCUCUCGUGUUU  AC AGUGUG GUUUU G
------------   CU   U                          UG  G      U     C
Stem-loop sequence UGAACAAUAUCUUGAACAGUUUGUUGACAGAAGAUAGAGAGCACAGGUGAUCAUACCCAAAAAAGCUUUUGUGUGUGAGCAGUUUUGUGCUCUCUAUCUUCUGUCAAUGUACUUCUCA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006598954.2
ncRNA:20   GACACGAGAGAUAGAAGACA   1
  =|||||||||||||||||||
targets:1009   UUGUGCUCUCUAUCUUCUGU   1028

0.0 PREDICTED: Glycine max teosinte glume architecture 1-like (LOC100792071), transcript variant X3, mRNA teosinte glume architecture 1-like(LOC100792071) coding protein psRNATarget
XM_003549082.3
ncRNA:20   GACACGAGAGAUAGAAGACA   1
  =|||||||||||||||||||
targets:1067   UUGUGCUCUCUAUCUUCUGU   1086

0.0 PREDICTED: Glycine max teosinte glume architecture 1-like (LOC100792071), transcript variant X2, mRNA teosinte glume architecture 1-like(LOC100792071) coding protein psRNATarget
XM_006598953.1
ncRNA:20   GACACGAGAGAUAGAAGACA   1
  =|||||||||||||||||||
targets:1174   UUGUGCUCUCUAUCUUCUGU   1193

0.0 PREDICTED: Glycine max teosinte glume architecture 1-like (LOC100792071), transcript variant X1, mRNA teosinte glume architecture 1-like(LOC100792071) coding protein psRNATarget
XM_003553896.3
ncRNA:20   GACACGAGAGAUAGAAGACA   1
  =|||||||||||||||||||
targets:1498   UUGUGCUCUCUAUCUUCUGU   1517

0.0 PREDICTED: Glycine max teosinte glume architecture 1-like (LOC100798317), mRNA teosinte glume architecture 1-like(LOC100798317) coding protein psRNATarget
XM_006575162.2
ncRNA:20   GACACGAGAGAUAGAAGACA   1
  |||||||||||*||||||||
targets:645   CUGUGCUCUCUCUCUUCUGU   664

1.5 PREDICTED: Glycine max squamosa promoter-binding-like protein 17 (LOC100819941), transcript variant X2, mRNA squamosa promoter-binding-like protein 17(LOC100819941) coding protein psRNATarget
XM_003551373.3
ncRNA:20   GACACGAGAGAUAGAAGACA   1
  |||||||||||*||||||||
targets:853   CUGUGCUCUCUCUCUUCUGU   872

1.5 PREDICTED: Glycine max squamosa promoter-binding-like protein 9 (LOC100789301), mRNA squamosa promoter-binding-like protein 9(LOC100789301) coding protein psRNATarget
XM_003518032.3
ncRNA:20   GACACGAGAGAUAGAAGACA   1
  |||||||||||*||||||||
targets:931   CUGUGCUCUCUCUCUUCUGU   950

1.5 PREDICTED: Glycine max squamosa promoter-binding-like protein 17 (LOC100819941), transcript variant X1, mRNA squamosa promoter-binding-like protein 17(LOC100819941) coding protein psRNATarget
XM_003553380.3
ncRNA:20   GACACGAGAGAUAGAAGACA   1
  |||||||||||*||||||||
targets:1152   CUGUGCUCUCUCUCUUCUGU   1171

1.5 PREDICTED: Glycine max squamosa promoter-binding-like protein 9 (LOC100807165), mRNA squamosa promoter-binding-like protein 9(LOC100807165) coding protein psRNATarget
XM_003520486.3
ncRNA:20   GACACGAGAGAUAGAAGACA   1
  |||||||||||*||||||||
targets:1208   CUGUGCUCUCUCUCUUCUGU   1227

1.5 PREDICTED: Glycine max squamosa promoter-binding-like protein 9 (LOC100780949), transcript variant X2, mRNA squamosa promoter-binding-like protein 9(LOC100780949) coding protein psRNATarget
XM_006576789.2
ncRNA:20   GACACGAGAGAUAGAAGACA   1
  |||||||||||*||||||||
targets:1254   CUGUGCUCUCUCUCUUCUGU   1273

1.5 PREDICTED: Glycine max squamosa promoter-binding-like protein 9 (LOC100780949), transcript variant X1, mRNA squamosa promoter-binding-like protein 9(LOC100780949) coding protein psRNATarget
XM_006573100.2
ncRNA:20   GACACGAGAGAUAGAAGACA   1
  |||||||||||*||||||||
targets:1201   CUGUGCUCUCUCUCUUCUGU   1220

1.5 PREDICTED: Glycine max squamosa promoter-binding-like protein 6 (LOC100797372), transcript variant X2, mRNA squamosa promoter-binding-like protein 6(LOC100797372) coding protein psRNATarget
XM_006573101.2
ncRNA:20   GACACGAGAGAUAGAAGACA   1
  |||||||||||*||||||||
targets:1217   CUGUGCUCUCUCUCUUCUGU   1236

1.5 PREDICTED: Glycine max squamosa promoter-binding-like protein 6 (LOC100797372), transcript variant X3, mRNA squamosa promoter-binding-like protein 6(LOC100797372) coding protein psRNATarget
XM_003517812.3
ncRNA:20   GACACGAGAGAUAGAAGACA   1
  |||||||||||*||||||||
targets:1230   CUGUGCUCUCUCUCUUCUGU   1249

1.5 PREDICTED: Glycine max squamosa promoter-binding-like protein 6 (LOC100797372), transcript variant X4, mRNA squamosa promoter-binding-like protein 6(LOC100797372) coding protein psRNATarget
XM_006573099.2
ncRNA:20   GACACGAGAGAUAGAAGACA   1
  |||||||||||*||||||||
targets:1234   CUGUGCUCUCUCUCUUCUGU   1253

1.5 PREDICTED: Glycine max squamosa promoter-binding-like protein 6 (LOC100797372), transcript variant X1, mRNA squamosa promoter-binding-like protein 6(LOC100797372) coding protein psRNATarget
XM_006574896.2
ncRNA:20   GACACGAGAGAUAGAAGACA   1
  |||||||||||*||||||||
targets:1202   CUGUGCUCUCUCUCUUCUGU   1221

1.5 PREDICTED: Glycine max squamosa promoter-binding-like protein 6 (LOC100820149), transcript variant X2, mRNA squamosa promoter-binding-like protein 6(LOC100820149) coding protein psRNATarget
XM_014774711.1
ncRNA:20   GACACGAGAGAUAGAAGACA   1
  |||||||||||*||||||||
targets:1396   CUGUGCUCUCUCUCUUCUGU   1415

1.5 PREDICTED: Glycine max squamosa promoter-binding-like protein 16 (LOC100777766), transcript variant X3, mRNA squamosa promoter-binding-like protein 16(LOC100777766) coding protein psRNATarget
XM_003520080.3
ncRNA:20   GACACGAGAGAUAGAAGACA   1
  |||||||||||*||||||||
targets:1242   CUGUGCUCUCUCUCUUCUGU   1261

1.5 PREDICTED: Glycine max squamosa promoter-binding-like protein 6 (LOC100820149), transcript variant X3, mRNA squamosa promoter-binding-like protein 6(LOC100820149) coding protein psRNATarget
XM_006574895.2
ncRNA:20   GACACGAGAGAUAGAAGACA   1
  |||||||||||*||||||||
targets:1245   CUGUGCUCUCUCUCUUCUGU   1264

1.5 PREDICTED: Glycine max squamosa promoter-binding-like protein 6 (LOC100820149), transcript variant X1, mRNA squamosa promoter-binding-like protein 6(LOC100820149) coding protein psRNATarget
XM_014774710.1
ncRNA:20   GACACGAGAGAUAGAAGACA   1
  |||||||||||*||||||||
targets:1628   CUGUGCUCUCUCUCUUCUGU   1647

1.5 PREDICTED: Glycine max squamosa promoter-binding-like protein 16 (LOC100777766), transcript variant X2, mRNA squamosa promoter-binding-like protein 16(LOC100777766) coding protein psRNATarget
XM_006578458.2
ncRNA:20   GACACGAGAGAUAGAAGACA   1
  |||||||||||*||||||||
targets:1876   CUGUGCUCUCUCUCUUCUGU   1895

1.5 PREDICTED: Glycine max squamosa promoter-binding-like protein 16 (LOC100777766), transcript variant X1, mRNA squamosa promoter-binding-like protein 16(LOC100777766) coding protein psRNATarget
XM_014773774.1
ncRNA:20   GACACGAGAGAUAGAAGACA   1
  |||||||||||*||||||||
targets:2274   CUGUGCUCUCUCUCUUCUGU   2293

1.5 PREDICTED: Glycine max squamosa promoter-binding-like protein 9 (LOC100780949), transcript variant X3, mRNA squamosa promoter-binding-like protein 9(LOC100780949) coding protein psRNATarget
XM_006578646.2
ncRNA:20   GACACGAGAGAUAGAAGACA   1
  =||||||||||*||||||||
targets:1180   UUGUGCUCUCUCUCUUCUGU   1199

1.5 PREDICTED: Glycine max squamosa promoter-binding-like protein 13A (LOC100787407), transcript variant X2, mRNA squamosa promoter-binding-like protein 13A(LOC100787407) coding protein psRNATarget
XM_006581797.2
ncRNA:20   GACACGAGAGAUAGAAGACA   1
  =||||||||||*||||||||
targets:1285   UUGUGCUCUCUCUCUUCUGU   1304

1.5 PREDICTED: Glycine max squamosa promoter-binding-like protein 13A (LOC102664649), transcript variant X4, mRNA squamosa promoter-binding-like protein 13A(LOC102664649) coding protein psRNATarget
XM_006581796.2
ncRNA:20   GACACGAGAGAUAGAAGACA   1
  =||||||||||*||||||||
targets:1415   UUGUGCUCUCUCUCUUCUGU   1434

1.5 PREDICTED: Glycine max squamosa promoter-binding-like protein 13A (LOC102664649), transcript variant X2, mRNA squamosa promoter-binding-like protein 13A(LOC102664649) coding protein psRNATarget
XM_003523107.3
ncRNA:20   GACACGAGAGAUAGAAGACA   1
  =||||||||||*||||||||
targets:1565   UUGUGCUCUCUCUCUUCUGU   1584

1.5 PREDICTED: Glycine max squamosa promoter-binding-like protein 13A (LOC100787407), transcript variant X1, mRNA squamosa promoter-binding-like protein 13A(LOC100787407) coding protein psRNATarget
XM_014776513.1
ncRNA:20   GACACGAGAGAUAGAAGACA   1
  =||||||||||*||||||||
targets:1572   UUGUGCUCUCUCUCUUCUGU   1591

1.5 PREDICTED: Glycine max squamosa promoter-binding-like protein 13A (LOC102664649), transcript variant X3, mRNA squamosa promoter-binding-like protein 13A(LOC102664649) coding protein psRNATarget
XM_014776512.1
ncRNA:20   GACACGAGAGAUAGAAGACA   1
  =||||||||||*||||||||
targets:1822   UUGUGCUCUCUCUCUUCUGU   1841

1.5 PREDICTED: Glycine max squamosa promoter-binding-like protein 13A (LOC102664649), transcript variant X1, mRNA squamosa promoter-binding-like protein 13A(LOC102664649) coding protein psRNATarget
XM_014775411.1
ncRNA:20   GACACGAGAGAUAGAAGACA   1
  =||||||||||*||||||||
targets:1855   UUGUGCUCUCUCUCUUCUGU   1874

1.5 PREDICTED: Glycine max squamosa promoter-binding-like protein 6 (LOC100817547), transcript variant X2, mRNA squamosa promoter-binding-like protein 6(LOC100817547) coding protein psRNATarget
XM_006579427.2
ncRNA:20   GACACGAGAGAUAGAAGACA   1
  =||||||||||*||||||||
targets:1903   UUGUGCUCUCUCUCUUCUGU   1922

1.5 PREDICTED: Glycine max squamosa promoter-binding-like protein 6 (LOC100817547), transcript variant X1, mRNA squamosa promoter-binding-like protein 6(LOC100817547) coding protein psRNATarget
XM_006600536.2
ncRNA:20   GACACGAGAGAUAGAAGACA   1
  =||||||||||*||||||||
targets:1894   UUGUGCUCUCUCUCUUCUGU   1913

1.5 PREDICTED: Glycine max teosinte glume architecture 1-like (LOC100812110), mRNA teosinte glume architecture 1-like(LOC100812110) coding protein psRNATarget
XM_006591518.2
ncRNA:20   GACACGAGAGAUAGAAGACA   1
  *||||||||||*||||||||
targets:438   GUGUGCUCUCUCUCUUCUGU   457

1.5 PREDICTED: Glycine max squamosa promoter-binding-like protein 7 (LOC100786328), mRNA squamosa promoter-binding-like protein 7(LOC100786328) coding protein psRNATarget
XM_003530122.3
ncRNA:20   GACACGAGAGAUAGAAGACA   1
  *||||||||||*||||||||
targets:1063   GUGUGCUCUCUCUCUUCUGU   1082

1.5 PREDICTED: Glycine max squamosa promoter-binding-like protein 7 (LOC100780159), mRNA squamosa promoter-binding-like protein 7(LOC100780159) coding protein psRNATarget
XM_003520407.3
ncRNA:20   GACACGAGAGAUAGAAGACA   1
  *||||||||||*||||||||
targets:1080   GUGUGCUCUCUCUCUUCUGU   1099

1.5 PREDICTED: Glycine max squamosa promoter-binding-like protein 7 (LOC100816072), mRNA squamosa promoter-binding-like protein 7(LOC100816072) coding protein psRNATarget
XM_003517894.3
ncRNA:20   GACACGAGAGAUAGAAGACA   1
  *||||||||||*||||||||
targets:1237   GUGUGCUCUCUCUCUUCUGU   1256

1.5 PREDICTED: Glycine max squamosa promoter-binding-like protein 7 (LOC100806582), transcript variant X1, mRNA squamosa promoter-binding-like protein 7(LOC100806582) coding protein psRNATarget
NM_001249380.1
ncRNA:20   GACACGAGAGAUAGAAGACA   1
  ***|||||||||||||||||
targets:591   AGAUGCUCUCUAUCUUCUGU   610

2.0 Glycine max uncharacterized LOC100527199 (LOC100527199), mRNA uncharacterized LOC100527199(LOC100527199) coding protein psRNATarget
BT092024.1
ncRNA:20   GACACGAGAGAUAGAAGACA   1
  ***|||||||||||||||||
targets:591   AGAUGCUCUCUAUCUUCUGU   610

2.0 Soybean clone JCVI-FLGm-9K12 unknown mRNA NA coding protein psRNATarget
XM_006590252.2
ncRNA:20   GACACGAGAGAUAGAAGACA   1
  |*|||||||||*||||||||
targets:1185   CCGUGCUCUCUCUCUUCUGU   1204

2.5 PREDICTED: Glycine max squamosa promoter-binding-like protein 12-like (LOC100796013), transcript variant X4, mRNA squamosa promoter-binding-like protein 12-like(LOC100796013) coding protein psRNATarget
XM_006590253.2
ncRNA:20   GACACGAGAGAUAGAAGACA   1
  |*|||||||||*||||||||
targets:1252   CCGUGCUCUCUCUCUUCUGU   1271

2.5 PREDICTED: Glycine max squamosa promoter-binding-like protein 12-like (LOC100796013), transcript variant X3, mRNA squamosa promoter-binding-like protein 12-like(LOC100796013) coding protein psRNATarget
NM_001255388.2
ncRNA:20   GACACGAGAGAUAGAAGACA   1
  |*|||||||||*||||||||
targets:1270   CCGUGCUCUCUCUCUUCUGU   1289

2.5 Glycine max squamosa promoter-binding-like protein 12-like (LOC100796013), mRNA squamosa promoter-binding-like protein 12-like(LOC100796013) coding protein psRNATarget
BT093985.1
ncRNA:20   GACACGAGAGAUAGAAGACA   1
  |*|||||||||*||||||||
targets:1271   CCGUGCUCUCUCUCUUCUGU   1290

2.5 Soybean clone JCVI-FLGm-24F23 unknown mRNA NA coding protein psRNATarget
XM_006590250.2
ncRNA:20   GACACGAGAGAUAGAAGACA   1
  |*|||||||||*||||||||
targets:1344   CCGUGCUCUCUCUCUUCUGU   1363

2.5 PREDICTED: Glycine max squamosa promoter-binding-like protein 12-like (LOC100796013), transcript variant X2, mRNA squamosa promoter-binding-like protein 12-like(LOC100796013) coding protein psRNATarget
XM_006590256.2
ncRNA:20   GACACGAGAGAUAGAAGACA   1
  |*|||||||||*||||||||
targets:1376   CCGUGCUCUCUCUCUUCUGU   1395

2.5 PREDICTED: Glycine max squamosa promoter-binding-like protein 12-like (LOC100796013), transcript variant X5, mRNA squamosa promoter-binding-like protein 12-like(LOC100796013) coding protein psRNATarget
XM_006601826.2
ncRNA:20   GACACGAGAGAUAGAAGACA   1
  |*|||||||||*||||||||
targets:1315   CCGUGCUCUCUCUCUUCUGU   1334

2.5 PREDICTED: Glycine max squamosa promoter-binding-like protein 12 (LOC100781289), transcript variant X3, mRNA squamosa promoter-binding-like protein 12(LOC100781289) coding protein psRNATarget
XM_006601825.2
ncRNA:20   GACACGAGAGAUAGAAGACA   1
  |*|||||||||*||||||||
targets:1347   CCGUGCUCUCUCUCUUCUGU   1366

2.5 PREDICTED: Glycine max squamosa promoter-binding-like protein 12 (LOC100781289), transcript variant X2, mRNA squamosa promoter-binding-like protein 12(LOC100781289) coding protein psRNATarget
XM_006601827.1
ncRNA:20   GACACGAGAGAUAGAAGACA   1
  |*|||||||||*||||||||
targets:1385   CCGUGCUCUCUCUCUUCUGU   1404

2.5 PREDICTED: Glycine max squamosa promoter-binding-like protein 12 (LOC100781289), transcript variant X1, mRNA squamosa promoter-binding-like protein 12(LOC100781289) coding protein psRNATarget
XM_014771012.1
ncRNA:20   GACACGAGAGAUAGAAGACA   1
  |*|||||||||*||||||||
targets:1414   CCGUGCUCUCUCUCUUCUGU   1433

2.5 PREDICTED: Glycine max squamosa promoter-binding-like protein 12 (LOC100781289), transcript variant X4, mRNA squamosa promoter-binding-like protein 12(LOC100781289) coding protein psRNATarget
XM_006590249.2
ncRNA:20   GACACGAGAGAUAGAAGACA   1
  |*|||||||||*||||||||
targets:1596   CCGUGCUCUCUCUCUUCUGU   1615

2.5 PREDICTED: Glycine max squamosa promoter-binding-like protein 12-like (LOC100796013), transcript variant X1, mRNA squamosa promoter-binding-like protein 12-like(LOC100796013) coding protein psRNATarget
XM_006601830.2
ncRNA:20   GACACGAGAGAUAGAAGACA   1
  |*|||||||||*||||||||
targets:1559   CCGUGCUCUCUCUCUUCUGU   1578

2.5 PREDICTED: Glycine max squamosa promoter-binding-like protein 12 (LOC100781289), transcript variant X5, mRNA squamosa promoter-binding-like protein 12(LOC100781289) coding protein psRNATarget
XM_006601829.2
ncRNA:20   GACACGAGAGAUAGAAGACA   1
  |*|||||||||*||||||||
targets:1966   CCGUGCUCUCUCUCUUCUGU   1985

2.5 PREDICTED: Glycine max squamosa promoter-binding-like protein 12 (LOC100781289), transcript variant X6, mRNA squamosa promoter-binding-like protein 12(LOC100781289) coding protein psRNATarget
LQ242608.1
ncRNA:20   GACACGAGAGAUA-GAAGACA   1
  =||||||||||||-|||||||
targets:97   UUGUGCUCUCUAUACUUCUGU   117

3.0 Sequence 8603 from Patent EP2985353 NA coding protein psRNATarget
HI410478.1
ncRNA:20   GACACGAGAGAUA-GAAGACA   1
  =||||||||||||-|||||||
targets:97   UUGUGCUCUCUAUACUUCUGU   117

3.0 Sequence 8603 from Patent EP2074227 NA coding protein psRNATarget
JB170939.1
ncRNA:20   GACACGAGAGAUA-GAAGACA   1
  =||||||||||||-|||||||
targets:97   UUGUGCUCUCUAUACUUCUGU   117

3.0 Sequence 8603 from Patent EP2559767 NA coding protein psRNATarget
XM_006573194.2
ncRNA:20   GACACGAGAGAUAGAAGACA   1
  **||*=||||||||||||||
targets:920   ACGUCUUCUCUAUCUUCUGU   939

3.0 PREDICTED: Glycine max mediator of RNA polymerase II transcription subunit 25-like (LOC100786254), transcript variant X4, mRNA mediator of RNA polymerase II transcription subunit 25-like(LOC100786254) coding protein psRNATarget
XM_006573193.2
ncRNA:20   GACACGAGAGAUAGAAGACA   1
  **||*=||||||||||||||
targets:1382   ACGUCUUCUCUAUCUUCUGU   1401

3.0 PREDICTED: Glycine max mediator of RNA polymerase II transcription subunit 25-like (LOC100786254), transcript variant X2, mRNA mediator of RNA polymerase II transcription subunit 25-like(LOC100786254) coding protein psRNATarget
XM_014774145.1
ncRNA:20   GACACGAGAGAUAGAAGACA   1
  **||*=||||||||||||||
targets:1399   ACGUCUUCUCUAUCUUCUGU   1418

3.0 PREDICTED: Glycine max mediator of RNA polymerase II transcription subunit 25-like (LOC100786254), transcript variant X3, mRNA mediator of RNA polymerase II transcription subunit 25-like(LOC100786254) coding protein psRNATarget
XM_006573192.2
ncRNA:20   GACACGAGAGAUAGAAGACA   1
  **||*=||||||||||||||
targets:1377   ACGUCUUCUCUAUCUUCUGU   1396

3.0 PREDICTED: Glycine max mediator of RNA polymerase II transcription subunit 25-like (LOC100786254), transcript variant X1, mRNA mediator of RNA polymerase II transcription subunit 25-like(LOC100786254) coding protein psRNATarget

Reference

1 PMID:20122185
"Prediction of novel miRNAs and associated target genes in Glycine max";
Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G;
BMC Bioinformatics. 11 Suppl 1:S14(2010).
2 PMID:24475082
"Systems and evolutionary characterization of microRNAs and their underlying regulatory networks in soybean cotyledons";
Goettel W, Liu Z, Xia J, Zhang W, Zhao PX, An YQ;
PLoS One. 9:e86153(2014).