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BaseInfo

ncRNA ID	gma-miR1520k
Species	Glycine max
Class	miRNA
Genome position	chr19:5270308-5270435 [+]
Reference genome	v1.0
Source	miRBase
Length	24
Mature sequence(if miRNA)	89 - AAUCAGAACAUGACACAUGACAGU - 112
Stem-loop(if miRNA)	U         A            C                AGUCA    AAACAGCAAUGUAUUU  UCUUAUUGG UGAUGAUUGUCA GUGUCAUGUUCUGAUU     AUGA                C  ||||||||| |||||||||||| ||||||||||||||||     ||||  AGAAUAACC ACUACUGACAGU CACAGUACAAGACUAA     CUAC                A A         A            A                ----C    AGUUGUGGUACUUUCU
Stem-loop sequence	UUCUUAUUGGAUGAUGAUUGUCACGUGUCAUGUUCUGAUUAGUCAAUGAAAACAGCAAUGUAUUUCAUCUUUCAUGGUGUUGACAUCCAAUCAGAACAUGACACAUGACAGUCAUCAACCAAUAAGAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ242574.1	ncRNA:24   UGACAGUACACAGUACAAGACUAA   1   |||||||*||||||||||||*||| targets:16   ACUGUCACGUGUCAUGUUCUAAUU   39 Target Full Sequence	2.5	Sequence 8569 from Patent EP2985353	NA	coding protein	psRNATarget
HI410444.1	ncRNA:24   UGACAGUACACAGUACAAGACUAA   1   |||||||*||||||||||||*||| targets:16   ACUGUCACGUGUCAUGUUCUAAUU   39 Target Full Sequence	2.5	Sequence 8569 from Patent EP2074227	NA	coding protein	psRNATarget
JB170905.1	ncRNA:24   UGACAGUACACAGUACAAGACUAA   1   |||||||*||||||||||||*||| targets:16   ACUGUCACGUGUCAUGUUCUAAUU   39 Target Full Sequence	2.5	Sequence 8569 from Patent EP2559767	NA	coding protein	psRNATarget
HI410445.1	ncRNA:24   UGACAGUACACAGUACAAGACUAA   1   |||||||*||||||||||||*||| targets:77   ACUGUCACGUGUCAUGUUCUAAUU   100 Target Full Sequence	2.5	Sequence 8570 from Patent EP2074227	NA	coding protein	psRNATarget
JB170906.1	ncRNA:24   UGACAGUACACAGUACAAGACUAA   1   |||||||*||||||||||||*||| targets:77   ACUGUCACGUGUCAUGUUCUAAUU   100 Target Full Sequence	2.5	Sequence 8570 from Patent EP2559767	NA	coding protein	psRNATarget
LQ242575.1	ncRNA:24   UGACAGUACACAGUACAAGACUAA   1   |||||||*||||||||||||*||| targets:77   ACUGUCACGUGUCAUGUUCUAAUU   100 Target Full Sequence	2.5	Sequence 8570 from Patent EP2985353	NA	coding protein	psRNATarget
XM_003518407.3	ncRNA:24   UGACAGUACACAGUACAAGACUAA   1   |||||||*||||||*||||||||| targets:1635   ACUGUCACGUGUCACGUUCUGAUU   1658 Target Full Sequence	2.5	PREDICTED: Glycine max UPF0481 protein At3g47200-like (LOC100803577), mRNA	UPF0481 protein At3g47200-like(LOC100803577)	coding protein	psRNATarget

Reference

1	PMID:20122185 "Prediction of novel miRNAs and associated target genes in Glycine max"; Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G; BMC Bioinformatics. 11 Suppl 1:S14(2010).