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BaseInfo

ncRNA ID	gma-miR5559
Species	Glycine max
Class	miRNA
Genome position	chr19:739278-739419 [+]
Reference genome	v1.0
Source	miRBase
Length	21
Mature sequence(if miRNA)	11 - UACUUGGUGAAUUGUUGGAUC - 31
Stem-loop(if miRNA)	UAUU         U       U          C       CAA  --------------AA  AUAUUGGAUUUGGA     UCCUUUUAC UGGUGAA UGUUGGAUCA UCUGUGU   CC                CC              G     ||||||||| ||||||| |||||||||| |||||||   ||                ||              C     AGGAAAAUG AUCACUU ACAACCUAGU AGAUAUA   GG                AA              U CGUU         U       U          A       -AA  AGACCGAACGUAGAGA  ACAGAAGACGUACU
Stem-loop sequence	UAUUUCCUUUUACUUGGUGAAUUGUUGGAUCACUCUGUGUCAACCAACCAUAUUGGAUUUGGAGCUUCAUGCAGAAGACAAAAGAGAUGCAAGCCAGAGGAAAUAUAGAAUGAUCCAACAUUUCACUAUGUAAAAGGAUUGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001254295.1	ncRNA:21   CUAGGUUGUUAAGUGGUUCAU   1   |||||||||=||||||||||| targets:1485   GAUCCAACAGUUCACCAAGUA   1505 Target Full Sequence	1.5	Glycine max sieve element occlusion s (SEOS), mRNA	sieve element occlusion s(SEOS)	coding protein	psRNATarget
HM162873.1	ncRNA:21   CUAGGUUGUUAAGUGGUUCAU   1   |||||||||=||||||||||| targets:1485   GAUCCAACAGUUCACCAAGUA   1505 Target Full Sequence	1.5	Glycine max sieve element occlusion s (SEOs) mRNA, complete cds	NA	coding protein	psRNATarget

Reference

1

PMID:22156213 "MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs"; Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC; Genes Dev. 25:2540-2553(2011).