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BaseInfo

ncRNA ID	gma-miR5037b
Species	Glycine max
Class	miRNA
Genome position	chr18:61626669-61626771 [+]
Reference genome	v1.0
Source	miRBase
Length	20
Mature sequence(if miRNA)	5 - AACCCUCAAAGGCUUCCUAG - 24
Stem-loop(if miRNA)	-           --      U      CAU    CGG  A       U CAGU AACCCUCAAAG  GCUUCC AGACUC   GUUA   UC AAUCAAU A |||| |||||||||||  |||||| ||||||   ||||   || ||||||| A GUCA UUGGGGGUUUC  UGAAGG UUUGAG   UAAU   GG UUAGUUG U     A           AA      C      AAU    -AA  A       C
Stem-loop sequence	CAGUAACCCUCAAAGGCUUCCUAGACUCCAUGUUACGGUCAAAUCAAUUAAUCGUUGAUUAGGAAUAAUUAAGAGUUUCGGAAGUAACUUUGGGGGUUAACUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AB083031.1	ncRNA:20   GAUCCUUCGGAAACUCCCAA   1   =||||||||=|||||||||* targets:1096   UUAGGAAGCUUUUGAGGGUG   1115 Target Full Sequence	2.5	Glycine max mRNA for syringolide-induced protein 13-1-1, complete cds	NA	coding protein	psRNATarget
NM_001251665.1	ncRNA:20   GAUCCUUCGGAAACUCCCAA   1   =||||||||=|||||||||* targets:1096   UUAGGAAGCUUUUGAGGGUG   1115 Target Full Sequence	2.5	Glycine max syringolide-induced protein 13-1-1 (13-1-1), mRNA	syringolide-induced protein 13-1-1(13-1-1)	coding protein	psRNATarget
XM_006589358.2	ncRNA:20   GAUCCUUCGGAAACUCCCAA   1   =|=|||||||||||*||||| targets:1258   UUGGGAAGCCUUUGUGGGUU   1277 Target Full Sequence	2.5	PREDICTED: Glycine max vinorine synthase-like (LOC102668997), mRNA	vinorine synthase-like(LOC102668997)	coding protein	psRNATarget
XM_003529120.3	ncRNA:20   GAUCCUUCGGAAACUCCCAA   1   |*||*=|||||||||||||| targets:1344   CCAGAGAGCCUUUGAGGGUU   1363 Target Full Sequence	3.0	PREDICTED: Glycine max pyruvate decarboxylase 2 (LOC100789053), mRNA	pyruvate decarboxylase 2(LOC100789053)	coding protein	psRNATarget
XM_003516906.3	ncRNA:20   GAUCCUUCGGAAACUCCCAA   1   |*||*=|||||||||||||| targets:1414   CCAGAGAGCCUUUGAGGGUU   1433 Target Full Sequence	3.0	PREDICTED: Glycine max pyruvate decarboxylase 2 (LOC100787315), mRNA	pyruvate decarboxylase 2(LOC100787315)	coding protein	psRNATarget
XM_003552219.3	ncRNA:20   GAUCCUUCGGAAACUCCCAA   1   |*||*=|||||||||||||| targets:1447   CCAGAGAGCCUUUGAGGGUU   1466 Target Full Sequence	3.0	PREDICTED: Glycine max pyruvate decarboxylase 2 (LOC100782747), mRNA	pyruvate decarboxylase 2(LOC100782747)	coding protein	psRNATarget

Reference

1

PMID:21663675 "Identification of novel soybean microRNAs involved in abiotic and biotic stresses"; Kulcheski FR, de Oliveira LF, Molina LG, Almerao MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimaraes FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R; BMC Genomics. 12:307(2011).